Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A23
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      37   0.010
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      37   0.013
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      35   0.039
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     32   0.37 
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   29   2.6  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   4.5  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       28   4.5  
SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +3

Query: 330 SEMNPDYFTMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDFSDTK-KAADIINQWANE 503
           S++      + NKI+  +++ + E+F    R+ Y SE+  +DF +    A   +N W ++
Sbjct: 48  SDLGYGEIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQ 107

Query: 504 KTRGHIKSPISDDTID 551
           +T+G+IK  I    I+
Sbjct: 108 QTKGNIKELIPHGVIN 123


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
 Frame = +3

Query: 177 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDK-FLGNGDYSGVANPYISLSKTFSEMNPDYF 353
           N+  SP  +++ + +   GA   +  ++ K F    D     + ++      S  + +  
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNA-SNSDGNQI 87

Query: 354 TMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGHIKS 527
            MAN+++    + + E+F    ++ + +E+  +D+  ++  A D +N+W  +KT+  IK+
Sbjct: 88  LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147

Query: 528 PISD 539
            I +
Sbjct: 148 LIPE 151


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +3

Query: 354 TMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHI 521
           ++AN +++   +++ ++FT I  + Y +++  +D+ +D + A   +NQW  E+T+  I
Sbjct: 51  SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 339 NPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEV-ETIDFSDTKKAADIINQWANEKTRG 515
           +PD         + +K T D +    + + +SEV E  DFS  K   D + +  +EK R 
Sbjct: 102 DPDVMERILTERIHDKLTSDSELEPLLNELKSEVAEDYDFSVRKAIVDYVLKDPSEKNRL 161

Query: 516 HIKS 527
           HIKS
Sbjct: 162 HIKS 165


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 280 PLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 146
           PLP + + +   PS +PA Y S + +T  G  +TF   D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 282 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 428
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 282 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 428
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +3

Query: 282 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKF-TITVR 422
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + + T++++
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSIK 161


>SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/95 (23%), Positives = 33/95 (34%)
 Frame = +3

Query: 225 KAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEK 404
           K G G G   E+   + N   +        L    S  N       +K+Y+   + +D  
Sbjct: 120 KHGFGYGKNGEVILVMPNERLNIKKIMVFELFSVLSGYNFLRILKVDKVYLKKLFLMDNA 179

Query: 405 FTITVRQYQSEVETIDFSDTKKAADIINQWANEKT 509
           F+    +  S VET  F +        N  AN  T
Sbjct: 180 FSTVPGEANSNVETQSFIEASVETFTENMLANHAT 214


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 285 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP*ETAKK 130
           N  C +TCR+P +Y    +LC     S     K  ++ P     F    AKK
Sbjct: 620 NAQCRQTCRTPPNY---AELCGSLWISRITRKKPNYALPHKRVAFSNSQAKK 668


>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/93 (21%), Positives = 39/93 (41%)
 Frame = -3

Query: 325 VLLKLMYGLATPL*SPLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 146
           V+ + M G+  P+ +P    ++    +P+  P L  +I  +T    +TT L    ++   
Sbjct: 131 VIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFLTNLPMETTELMLSMLFNQF 190

Query: 145 RNCKEVLSMASPKAVLLYSWSEE*NARTLQTAI 47
              KEV  +     +    +  E  A T + A+
Sbjct: 191 PGFKEVRLVPGRSDISFVEFENEVQAGTAKDAL 223


>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1181

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 288 SGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETIDFSDTK 467
           S    P+I +  T    NP++F ++    +  + T DE + +    + ++   I    +K
Sbjct: 279 SNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHYVVADVSFGNQSVVIPRRSSK 337

Query: 468 KAADI--INQWAN 500
           K   +  +NQ+ N
Sbjct: 338 KMEGLHDMNQYLN 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,018,943
Number of Sequences: 59808
Number of extensions: 347962
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)