Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A22
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)            29   3.8  
SB_19084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)
          Length = 815

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 278 SSRCPNISNYPYDCLVNFASSPCMLRSSHRSE*RCAGLSPG*SAEANTLYAP 123
           SSR P+I  Y Y CLV   S+  +LR   +       L PG S   N +YAP
Sbjct: 46  SSRLPDIPGYLYTCLVTAGSADKLLRVRVKKR----ALLPG-SLHVN-IYAP 91


>SB_19084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
 Frame = +1

Query: 346 DRLQQEIYR--DXXXXXXXXXXGNEPATGSCEIIVAVRSETGSS--NFFIISGW 495
           DRL QE                 N P   + E++   R  TGS   N F+IS W
Sbjct: 237 DRLSQESITIITAITHSDVIDAANNPENAAAEVVAKAREATGSQQMNTFLISNW 290


>SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 494 GHRQVLATESPGRHLYDQIRRLPEWTENVE 583
           GH++ L   S  RHL     + P W E +E
Sbjct: 22  GHKEALGILSAYRHLSKSNNKTPSWQEGLE 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,028,690
Number of Sequences: 59808
Number of extensions: 434649
Number of successful extensions: 1087
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)