Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A21
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 31 0.12
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 26 2.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 2.6
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 26 3.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 3.4
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 3.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 6.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 6.0
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 7.9
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 30.7 bits (66), Expect = 0.12
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 239 LQHTGECAFRRV*HNTQWSRLRGVGSWRH--RLHTTCYYCSYRENYTASGIQPPRQAEET 412
+ G +FR V +N + R R GSW++ RL T + ++ + G P + +
Sbjct: 116 IHRLGRISFRSVKNNRDYLRNRKTGSWQYLSRLAATKEF-AFMKILHEHGFPVPAPIDHS 174
Query: 413 RHC 421
RHC
Sbjct: 175 RHC 177
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 141 YDLGHRKLLC-GGSLISSKYVLTAAHCVTGNVFDYSTLENVRLGEYNIT 284
Y + H C GG L + L TG + + L N+ +GE++ T
Sbjct: 244 YVVDHHSYFCFGGELCHAPPKLITRRLDTGEEYGKTKLSNIVIGEWSCT 292
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 258 VRLGEYNITHNGPDCVELEAGGIDCTLPVIIAPIEKIIPHP 380
+ LG+ +TH A GI + +++ +PHP
Sbjct: 331 IALGQGGVTHEATTSARASASGIPGAFEEVQQTVQEDLPHP 371
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 210 AHCVTGNVFDYSTLENVRLGEYNITHNG---PDCVELEAGGIDCTLPVIIAPIEKI 368
A C GN ++ + N +++I +G P C L G+ LP + +EK+
Sbjct: 44 ARCQGGNNAGHTIVANGVTYDFHILPSGLVNPKCQNLIGSGVVVYLPAFFSELEKL 99
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 91 PRILLPDTLPQHLPSRSGGKAVTA 20
PR + P T+P+ P GG +VTA
Sbjct: 450 PRKVPPSTVPKMNPKLQGGNSVTA 473
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 94 PPRILLPDTLPQHLPSRSGGKAVTALEQL 8
PP++L DTLP+ + + G A+ A E +
Sbjct: 237 PPKLLASDTLPKFID--AAGSAIQAFESI 263
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 149 KIIFDHHEPWIVIDLCDLTAENFITGHSSTAL 54
++ DHH V ++ D N +T HSST+L
Sbjct: 392 RLEIDHH----VQEIIDDVVSNLVTNHSSTSL 419
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 6.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 7 LTARELSQLSHQNAMASAVEECPVIKFSAVRSQRSMTIHGSW*SNMILVIGNCYAVA 177
L ++L L ++ VE P K S SQR + I SW N++L + C + A
Sbjct: 577 LEYKKLRCLRWKSLTEQVVELQPSCKSS---SQRHLIIRNSWARNLLLRLTGCSSEA 630
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 24.6 bits (51), Expect = 7.9
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 317 WRHRLHTTCYYCSYRENYTASGIQPPRQA-EETRHCA 424
W+H H +C++ + +G +P + + HC+
Sbjct: 223 WKHEEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCS 259
Score = 24.6 bits (51), Expect = 7.9
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 WRHRLHTTCYYCSYRENYTASGIQPPRQA-EETRHC 421
W+H H +C++ + +G +P + + HC
Sbjct: 335 WKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKHEEHC 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,231
Number of Sequences: 5004
Number of extensions: 45397
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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