Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A21
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230...    30   1.1  
11_06_0416 + 23307984-23308281,23310083-23310900                       29   2.6  
03_06_0207 - 32356951-32357058,32357187-32357256,32357363-323575...    29   2.6  
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939...    28   4.5  
01_06_0584 - 30407012-30408531,30408625-30408955                       28   4.5  
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352...    27   6.0  

>08_01_0282 +
           2299688-2299859,2300314-2300384,2300780-2300861,
           2300949-2301067,2301338-2301415,2301500-2301619,
           2301729-2301788
          Length = 233

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 300 CVELEAGGIDCTLPVIIAPIEKIIPHPEYN--PRDKQRKHDIALIRLKTTAP 449
           C     GGI      IIA + K + HPE N  P D++ K    ++ LK   P
Sbjct: 90  CFMRPPGGILAPGESIIATVFKFVEHPENNEKPLDQKCKVKFKIVSLKVKGP 141


>11_06_0416 + 23307984-23308281,23310083-23310900
          Length = 371

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 93  GEVTEIDDYPWLVVIEYDLGHRKLLCGGSLISSKYVLTAAHCVT 224
           GEV  +  +  +    YD+G  KL+C  +L S     TAA  +T
Sbjct: 276 GEVAAMAQHLLVAADRYDMGRLKLICEDTLCSHVDASTAATALT 319


>03_06_0207 -
           32356951-32357058,32357187-32357256,32357363-32357553,
           32358011-32358106,32359014-32359120,32359470-32359512,
           32359806-32359895,32360025-32360096,32362390-32362605
          Length = 330

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 312 PTPRSLDHCVLCYTLLNAHSPVCCNQRHC 226
           P+PR L H + CY  L+ +S  C     C
Sbjct: 252 PSPRLLKHIIRCYLRLSENSRACTALNSC 280


>07_03_1760 -
           29289997-29290377,29290539-29290755,29291152-29293953,
           29294134-29294178,29294274-29294358,29294791-29294875,
           29296429-29296530,29296747-29296851,29296940-29297029,
           29297163-29297258
          Length = 1335

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  FPPERDGKCCGRVSGNKILGGEVT 104
           FPPE  G C  R+S N  +GG  T
Sbjct: 883 FPPENAGSCPKRLSTNTNMGGPET 906


>01_06_0584 - 30407012-30408531,30408625-30408955
          Length = 616

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 361 RKLYRIRNTTPATSRGNTTL 420
           ++LYR+R T P+TS G T +
Sbjct: 319 KRLYRLRRTAPSTSGGGTVV 338


>08_02_1600 +
           28133818-28133900,28134240-28134345,28135169-28135255,
           28135354-28135438,28135510-28135691,28135921-28135991,
           28136078-28136168,28136250-28136324,28136436-28136537,
           28136620-28136742,28136823-28136891,28136990-28137058,
           28137158-28137211,28137315-28137368
          Length = 416

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 91  AVRSQRSMTIHGSW*SNMILVIGNCYAVAHSSVRSM 198
           A+RS  + T  G W S  +   GN Y +A   V SM
Sbjct: 318 AIRSLVNPTPEGDWFSTGVYTTGNPYGIAEDIVFSM 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,427
Number of Sequences: 37544
Number of extensions: 332159
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)