Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A21
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23840.1 68415.m02848 HNH endonuclease domain-containing prot...    28   3.8  
At3g20800.1 68416.m02630 rcd1-like cell differentiation protein,...    27   8.8  

>At2g23840.1 68415.m02848 HNH endonuclease domain-containing protein
           contains Pfam profile  PF01844: HNH endonuclease
          Length = 284

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 338 TCYYCSYRENYTASGIQPPRQAEE 409
           TC YCS REN T   + P  +  E
Sbjct: 186 TCQYCSSRENLTIDHVMPVSRGGE 209


>At3g20800.1 68416.m02630 rcd1-like cell differentiation protein,
           putative similar to protein involved in sexual
           development [Schizosaccharomyces pombe] GI:1620896;
           contains Pfam profile PF04078: Cell differentiation
           family, Rcd1-like
          Length = 316

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 321 LQLPTPRSLDHCVLCYTLLNAHSPVCCNQRHC 226
           ++ P+PR L H + CY  L+ +   C     C
Sbjct: 237 VEQPSPRLLKHIIRCYLRLSDNPRACAALASC 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,148
Number of Sequences: 28952
Number of extensions: 253703
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)