Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A20
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0880 + 29046842-29046990,29047467-29047701,29048132-290482...    29   2.3  
07_03_0455 + 18374327-18374533,18375136-18375482,18375959-183761...    29   3.0  

>04_04_0880 +
           29046842-29046990,29047467-29047701,29048132-29048227,
           29048887-29048958,29049091-29049195
          Length = 218

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 98  EYNFYQILRFVIKGRSRIT*ATF--VYLIKPILMLQWKGW 211
           EY   Q+  F++KGR+R+         L++P+L L W  W
Sbjct: 69  EYLQGQVAEFIVKGRARMPDLVIDSSSLLQPLLKLGWTQW 108


>07_03_0455 +
           18374327-18374533,18375136-18375482,18375959-18376193,
           18376629-18376724,18377392-18377463,18377596-18377700
          Length = 353

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 98  EYNFYQILRFVIKGRSRIT*ATF--VYLIKPILMLQWKGW 211
           EY   Q+  FV+KGR+R+         L++P+L L W  W
Sbjct: 204 EYFQGQVPEFVVKGRARMPDLVIDSSSLLQPLLKLGWTQW 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,498,580
Number of Sequences: 37544
Number of extensions: 224786
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)