Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A19
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   1.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   2.6  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   6.0  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   6.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   7.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   7.9  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   7.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +1

Query: 331 IRAAYEDVRSDASPTEWAVFKFEGA-----RIICSGRGSD 435
           IR  YE V S A    WA+F +E       +++ SG  +D
Sbjct: 14  IRNVYEKVLSGADDCSWAIFGYEKGQGNILKVVASGNDND 53


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 265  IPNPPTLLSQ**KITVICTVFYFYKFFGIFTSFKSHSISYFVYN 134
            + + P LLSQ      +C   YFY  F   +S KS S     YN
Sbjct: 1680 VEHMPNLLSQ----EALCAKLYFYTAFECMSSLKSDSHDTEEYN 1719


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 469 SSENCVRKLCESHFHVPSILYGHLR 395
           S E C+ KL E H +VP    G LR
Sbjct: 21  SVEECLSKLKEQHCYVPMRTIGRLR 45


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 303 RYFSWTILHNCFVFQTLRHCS 241
           +YF+ T LH  FVF  L  CS
Sbjct: 38  KYFTKTHLHRLFVFVVLLLCS 58


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 270 FVFQTLRHCSH--NNKKSQLYAQSFIFINFLVYLPV 169
           FV  TL+ C    +    + +   FIFI FLV++P+
Sbjct: 371 FVASTLQACVKVISTTHREYHLAVFIFIQFLVFVPL 406


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 288 TILHNCFVFQTLRHCS 241
           ++LHNC +F   R CS
Sbjct: 725 SLLHNCCIFYAYRACS 740


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 457 CVRKLCESHFHVPSILYGHLRT*XQPIL*ERRQTSRPHTPPVSYPGLYRWSSL 299
           C  + CE  F     L  H+    + I+      S PH   V + G  +WS L
Sbjct: 146 CTYQDCELRFATKQKLQNHVNRAHEKII----SYSCPHESCVGHEGFEKWSQL 194


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 267 RNNCAEWSKKS-NDDHRYRPGYDTG 338
           RN+   W +++ ND +R+R  YD+G
Sbjct: 206 RNDRNNWRERTHNDRYRHRDKYDSG 230


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 231 YYCESNVGGFGIRNNCAEWSKKSN 302
           +Y +S  GG+G R + ++W KK+N
Sbjct: 117 FYDKSKFGGYGDRGDESQW-KKAN 139


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 264 FQTLRHCSHNNKKSQLYAQSFI 199
           F+  +HCS+ NK+S L  + FI
Sbjct: 559 FRWSQHCSNFNKESMLSLREFI 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,399
Number of Sequences: 5004
Number of extensions: 42208
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)