Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A19
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1463 + 33787799-33787973,33788669-33789096                       29   2.6  
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    28   3.4  
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611...    27   6.0  

>04_04_1463 + 33787799-33787973,33788669-33789096
          Length = 200

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 252 GGFGIRNNCAEWSKKSNDDHRYR-PGYDTGG 341
           GG+G+R   AEW+ +S      R PG D GG
Sbjct: 127 GGYGVRRATAEWAMRSGRRVGARAPGDDGGG 157


>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 293 LGP-FCTIVSYSKPSDIALTIIKNHSYMHSLLFL*IFWYIY 174
           +GP F   ++Y  PS++   ++   S+ +SLL++ +F +I+
Sbjct: 76  VGPGFVISIAYLDPSNLQTDLVAGSSHRYSLLWVLLFGFIF 116


>01_06_1480 -
           37660591-37660720,37660899-37660930,37661061-37661155,
           37661460-37661527,37661608-37661694,37662884-37662912,
           37663019-37663138,37663854-37663905,37663986-37664050,
           37664174-37664536,37664637-37664711,37664803-37664940,
           37665025-37665181,37665471-37665478,37665576-37665710,
           37665965-37666082,37666791-37666915,37667571-37667717,
           37668297-37668380,37668671-37668800,37669196-37669347,
           37669678-37669857,37670660-37670731,37671104-37671295,
           37671366-37671411,37671498-37671647,37671725-37671882,
           37671995-37672101,37672191-37672407,37672484-37672696,
           37672852-37672972,37673072-37673253,37673475-37673672,
           37674770-37674967
          Length = 1447

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 149 LFCIQSRASGALERQTVTKRINHYIK 72
           ++C+++     L R TV  RI H++K
Sbjct: 850 IYCLKTLVKSCLPRSTVRDRIEHFLK 875


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,728
Number of Sequences: 37544
Number of extensions: 259852
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)