Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A19
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)           30   0.87 
SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)            28   4.6  
SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_58059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)
          Length = 141

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 316 IDRDTIRAAYEDVRSDASPTEWAVFKFEGARIIC 417
           ++++ I  A  D+R++ S   WAVF ++ +  IC
Sbjct: 4   VNKEQITEACVDIRNNDSENTWAVFTYDESNTIC 37


>SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 295 KVTMTTGIDRDTIRAAYEDVRSDASPTEWAVFKFEG 402
           K+ +     R  ++  ++D+    S T WAVF +EG
Sbjct: 69  KMAIDLNKHRSELQKTWQDIFDGKSDTNWAVFGYEG 104


>SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)
          Length = 262

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 306 DHRYRPGYDTGGV*GREV*RLSYRMGCXQVR-RCPY 410
           + RY  GYDTG +      RL YR G  Q R RC Y
Sbjct: 80  ESRYNQGYDTGTIES----RLRYRHGPIQSRLRCSY 111


>SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 345 IRRPYRIPVYTGGHRYFSWTILHNCFVF 262
           +  P+  P Y GGH +F W++L     F
Sbjct: 331 VASPHLFPPY-GGHSFFEWSLLRRKHAF 357


>SB_58059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +1

Query: 256 GLEYETIVQNGPRKVTMTTGIDRDTIRAAYEDVRSDASPTEWAVFKFEGARIICSGRGSD 435
           G E+      GP++ ++   +   T    Y   +  +  TEWAV  F G  ++     +D
Sbjct: 548 GYEWRPEAAWGPKRSSLPCDLVAATSARMYLAGQGGSGKTEWAVSMFRGRNVVVLTPEND 607

Query: 436 F---HRVSVRNSLMTNAH 480
               HR + R ++   A+
Sbjct: 608 LAHDHRNNPRLAVKAQAY 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,936
Number of Sequences: 59808
Number of extensions: 310481
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)