Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A19
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   1.8  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   1.8  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    27   5.4  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    27   7.1  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    27   7.1  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    27   9.4  

>Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical
           protein F33C8.2 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 312 GGHRYFSWTILHNCFVFQTLRHCSHNNK 229
           G H +  W      F F T+ HCS N K
Sbjct: 152 GTHFFAFWVSFQIIFAFSTVAHCSQNRK 179


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 390  EXSPFCRRGVRPHVLIRRPYRIPVYT 313
            +  P  R+ VR H L+ RPY +PV T
Sbjct: 1912 QTKPSPRQDVRFHTLVLRPYTVPVTT 1937


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 390  EXSPFCRRGVRPHVLIRRPYRIPVYT 313
            +  P  R+ VR H L+ RPY +PV T
Sbjct: 1912 QTKPSPRQDVRFHTLVLRPYTVPVTT 1937


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 223 TVICTVFYFYKFFGIFTSFKSHSISYFV 140
           T+  T  ++Y++     ++K+H  SYFV
Sbjct: 105 TLYMTEIFYYRYQSCIFNYKTHKFSYFV 132


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
           protein 2, isoform b protein.
          Length = 2027

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 348 LIRRPYRIPVYTGGHRYFSW-TILHNCFVFQTLRHCSHNNKKS 223
           +IRR  +  +  G   YF   TI+ NC V    +H   N+KK+
Sbjct: 96  IIRRNAKAIIEWGPFEYFILLTIIGNCVVLSMEQHLPKNDKKA 138


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
           activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 348 LIRRPYRIPVYTGGHRYFSW-TILHNCFVFQTLRHCSHNNKKS 223
           +IRR  +  +  G   YF   TI+ NC V    +H   N+KK+
Sbjct: 96  IIRRNAKAIIEWGPFEYFILLTIIGNCVVLSMEQHLPKNDKKA 138


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 AYEDVRSDASPTEWAVFKFEGARI 411
           A EDV  D +P EW ++   G R+
Sbjct: 161 AQEDVPFDEAPEEWKIYSPSGGRL 184


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 270 FVFQTLRHCSHNNKKSQLYAQSFIFINFLVYLPVLSHTRLVILY 139
           F  +TL + + N+  SQL+  S  ++  L  +  +SH++  +LY
Sbjct: 224 FKEETLANANPNDTSSQLFQVSRNWLQHLCSVATISHSQHKVLY 267


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 249 HCSHNNKKSQ--LYAQSFIFINFLVYLPVLSHTRLVILYTI 133
           H S N   +   ++ +  I +NF ++LP+LS+  +V L+ +
Sbjct: 219 HVSPNTSDATRVMFRKMIIGLNFQIFLPMLSYIPVVFLFIL 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,447,192
Number of Sequences: 27780
Number of extensions: 238214
Number of successful extensions: 576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)