Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A19
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40475.1 68415.m04995 expressed protein                             29   1.2  
At1g59865.1 68414.m06743 expressed protein                             29   2.2  
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    27   6.6  
At2g32530.1 68415.m03974 cellulose synthase family protein simil...    27   8.8  
At1g19410.1 68414.m02418 hypothetical protein                          27   8.8  

>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -1

Query: 462 RIAYGNSVKVTSTSRAYYTGTFELEXSPFCRRGVRPHVLIRRPYRIPVYTGGHRYFS 292
           +I    S +V S+SR YY G   +      R G   H L     R+P  T    Y+S
Sbjct: 16  KIIVKESSQVNSSSRIYYYGGASVPFLWETRPGTPKHALFSESLRLPPLTPPPSYYS 72


>At1g59865.1 68414.m06743 expressed protein
          Length = 175

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 358 TSRPHTPPVSYPGLYRWSSLLFLDHSAQLFRIPNPPTLLS 239
           +S  H P V +  + + SS +FL H    F I +P TLL+
Sbjct: 92  SSSSHFPEVDFQQIIKSSSFIFLKHC--YFHITSPKTLLN 129


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = +1

Query: 277 VQNGPRKVTMTTGIDRDTIRAAYEDVRSD----ASPTEWAVFKFEGARIICSGRGSDFHR 444
           + NGP  ++   G     +R  + D   D       +E  V  F+    IC  RGS    
Sbjct: 281 IVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDG 340

Query: 445 VSVRNSLM 468
             V +S++
Sbjct: 341 TGVHDSIV 348


>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 226 ITVICTVFYFYKFFGIFTSFKSHSISYFVYNQELAERSNVRPSLNE*ITT 77
           +  +C  F+ + +  + TS K    SY  Y + L ER +  PS++  +TT
Sbjct: 53  VAFLCESFFSFIWL-LITSIKWSPASYKSYPERLDERVHDLPSVDMFVTT 101


>At1g19410.1 68414.m02418 hypothetical protein
          Length = 435

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 289 DHSAQLFRIPNPPTLLSQ**KITVICTVFYFYKFFGIFTSFK 164
           DHS   F I N P L     +  +   +F + KF G FTS K
Sbjct: 234 DHSDNKFLIENMPKLE----EAYIDANIFEYEKFLGAFTSVK 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,585,468
Number of Sequences: 28952
Number of extensions: 215833
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)