Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A18
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604...    28   3.3  
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875...    28   3.3  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    27   7.7  
05_05_0316 + 24035163-24035228,24035524-24035583,24035710-240357...    27   7.7  

>03_02_0161 +
           6046949-6047063,6048759-6048844,6049029-6049094,
           6049408-6049860,6049960-6050115,6050319-6050465,
           6050570-6050641,6050730-6051293
          Length = 552

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = -3

Query: 397 ESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTK 218
           E  + ++  HE     E S +  V  ++  T T+AEL E+I +       + + +    K
Sbjct: 231 ELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDVANAVRFYQNQAAK 290

Query: 217 LTSESEFQNKE 185
           L  E     +E
Sbjct: 291 LNEEKRTLERE 301


>01_06_0880 +
           32687018-32687060,32687142-32687219,32687323-32687532,
           32687868-32689744
          Length = 735

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 232 TARTKLTSESEFQNKETISIVTKVGLVHK 146
           TA   +T E    NK++ ++V K+ LVHK
Sbjct: 130 TASVSITIEDTTSNKDSSTLVEKIKLVHK 158


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 469 WTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHG 359
           WT+    EA   P+ N +Y  + +E ++++++   HG
Sbjct: 367 WTLLAKQEAAFSPTYNRSYKKSSSECFKFIRNWLTHG 403


>05_05_0316 +
           24035163-24035228,24035524-24035583,24035710-24035787,
           24035862-24035913,24036124-24036395,24036508-24036750,
           24036849-24036995
          Length = 305

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = -3

Query: 436 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIANPATN 257
           D ST+P+    I  + R L    E   K     K YV+ ++ S   L +L + +   A  
Sbjct: 9   DASTDPDIDKNIRMTLRRLAQNREAARKSRLRKKAYVQQLEDSRMKLTQLEQELQR-ARQ 67

Query: 256 PELIHYLETARTKLTSESE 200
             +I      + + TSE+E
Sbjct: 68  QGIIISTSGDQQRSTSENE 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,608,823
Number of Sequences: 37544
Number of extensions: 163501
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)