Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A18
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.28 
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)                      30   0.85 
SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)                      30   0.85 
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)                  30   1.1  
SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)                   28   4.5  
SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  

>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 436 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           D S NP  +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 44  DESLNP--VPNEEEAAEYEQHLHEENEQEEELLRRFSREQDISTW 86


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 436  DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
            D S +P  +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 2404 DESLDP--VPNEEEAAEYKQQLHEENEQEEELLRRFSREQDISTW 2446


>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 420

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 436 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           D S +P  +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 234 DESLDP--VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 276


>SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 227

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 436 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           D S +P  +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 41  DESLDP--VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83


>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
          Length = 424

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 436 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           D S +P  +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 41  DESLDP--VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83


>SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 436 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           D S +P  +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 9   DESLDP--VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 51


>SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)
          Length = 684

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 466 TMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMD 314
           T+EELD  +K   T  N  PA T     LK+T ++G      + VY    D
Sbjct: 453 TLEELDPIVKSKLTEHNLDPATT----LLKTTVKNGADGMGDVSVYKETGD 499


>SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 445 AIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNE 281
           A++DPS NP+ L    +  +  + ++ H   P + I +   A+  S   +  L+E
Sbjct: 10  AMQDPSQNPHELKKSKDKEKAYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSE 64


>SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = -3

Query: 442 IKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLA---ELNEAIA 272
           + D    P +LPA  ++ R ++  H   N P    K    +++    TL+   E  +  A
Sbjct: 177 LTDIRPEPQHLPAFHQTERPIQYVHRESNHPPTITKNIPASINKRLSTLSSDKETFDQAA 236

Query: 271 NPATN-PELIHYLETARTKLTSESEFQNKETISIV 170
            P  N PE   Y  T   +  + S+ +N++  +I+
Sbjct: 237 PPYQNAPEESGYNYTLHYEPNTTSKRKNRQRNNII 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,005
Number of Sequences: 59808
Number of extensions: 202890
Number of successful extensions: 537
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)