Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A17
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   0.33 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    24   3.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   7.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    23   7.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.1  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    22   9.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    22   9.3  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.3  

>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 54  LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 146
           L+ SYY PF    DN  ++ V  YEA +  +
Sbjct: 20  LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 9   PEFSWYSPIKTGYYPLMTSYYFPFAQRP 92
           P+  +Y P +  YYP   +Y  P   +P
Sbjct: 110 PQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 135 RFLDIFEKTF 164
           RF+DIFE+TF
Sbjct: 528 RFIDIFEQTF 537


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 12   EFSWYSPIKTGYYPLMTSYYFPF 80
            +F  YS +K  YY L+  YYF +
Sbjct: 1066 DFGVYS-LKDEYYDLVDPYYFHY 1087


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 59  DFILFPIRSKAGQLQSTQRK 118
           D +LF I SKA +L ST  K
Sbjct: 748 DSVLFDITSKAARLASTCAK 767


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 27  SPIKTGYYPLMTSYYFP 77
           +PIK+  +PL++SY  P
Sbjct: 393 TPIKSATHPLLSSYSEP 409


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 30   PIKTGYYPLMTSYYFPFAQRP 92
            P +TGY PL  +  +P   RP
Sbjct: 1894 PNETGYVPLDLACLYPLRIRP 1914


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 50  SPDDFILFPIRSKAGQLQSTQRKELRSNTVLGH 148
           +PD   +FP  S    + +T +K+L + ++L H
Sbjct: 294 APDTKWIFPRESVLSHVFNTDKKKLEALSLLFH 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,178
Number of Sequences: 5004
Number of extensions: 10732
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)