Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A17
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   1.2  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    26   3.7  
11_01_0760 + 6385866-6385955,6386629-6386682,6386863-6387012,638...    25   8.6  
11_01_0753 + 6333019-6333108,6333427-6333603,6333783-6333836,633...    25   8.6  
10_01_0322 + 3516922-3517899                                           25   8.6  
01_07_0206 + 41990251-41992032,41992131-41992361                       25   8.6  

>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 138 TVLLRSSLRCVDCSCPAFERMG 73
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +3

Query: 96  NYNLHSV---KNYEAIRFLDIFEKT 161
           NYN+  V   KN+ A+R  DIF KT
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKT 545


>11_01_0760 +
           6385866-6385955,6386629-6386682,6386863-6387012,
           6387120-6387461
          Length = 211

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 111 CVDCSCPAFERMGNS 67
           C+D  CP F+R G S
Sbjct: 56  CLDMRCPGFQRTGGS 70


>11_01_0753 +
           6333019-6333108,6333427-6333603,6333783-6333836,
           6334015-6334164,6334271-6334612
          Length = 270

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 111 CVDCSCPAFERMGNS 67
           C+D  CP F+R G S
Sbjct: 115 CLDMRCPGFQRTGGS 129


>10_01_0322 + 3516922-3517899
          Length = 325

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 51  PLMTSYYFPFAQRPDNYNLHSVKNYEAI 134
           P  T    P A+RP  Y L SV +YE +
Sbjct: 26  PTATGSTTPAAKRPRRYALASVDDYEQL 53


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 74  PIRSKAGQLQSTQRKELRSNTVLGHF*KDFRTVPT 178
           P+RS AG   +   +    +T++G    DFR++ T
Sbjct: 11  PLRSAAGVFSAADNRLKEIDTLVGEIQMDFRSLHT 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,300,706
Number of Sequences: 37544
Number of extensions: 57214
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)