Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A17
         (180 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    27   3.2  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               26   4.3  
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)                26   5.6  
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                25   7.5  
SB_51275| Best HMM Match : Fic (HMM E-Value=0)                         25   9.9  
SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                 25   9.9  

>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 45   YYPLMTSYYFPFAQRPDNYN 104
            Y PL T+ ++ +  RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 92   RPLSEWEIV*SHQGIVTSLN 33
            RPL +W IV ++QG + S+N
Sbjct: 3254 RPLEDWPIVPTNQGTLVSVN 3273


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 21  WYSPIKTGYYPLMTSYYFPFAQRPDNY 101
           WYSPI  G Y  M   ++     PDNY
Sbjct: 432 WYSPINYGQYGSMAQCWY----SPDNY 454


>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
          Length = 67

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 159 SFQKCPRTVLLRSSLRCVDCSCPAFE 82
           SF  C  +  LRS   CV C C  FE
Sbjct: 36  SFTVCLCSTHLRSDRLCVHCPCRIFE 61


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 21  WYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAI 134
           +Y+P    YY   T  Y+ + +   +Y+ HS  + +AI
Sbjct: 253 YYNPRTCLYYNNNTGTYYTYNESSRSYDFHSQVDIQAI 290


>SB_51275| Best HMM Match : Fic (HMM E-Value=0)
          Length = 341

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 29  AY*DWLLSPDDFILFPIRSKA 91
           A+ DWLLS D  IL PI   A
Sbjct: 217 AFNDWLLSKDPEILHPIEFAA 237


>SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 1006

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 18  SWYSPIKTGYYPLMTSYYFPFAQRPDNYNL 107
           S+Y  I T  YP++ +Y  P  +  D Y L
Sbjct: 103 SYYGQILTLTYPILGNYGVPDTKAVDQYGL 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,261,625
Number of Sequences: 59808
Number of extensions: 71342
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 305523813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)