Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A17
         (180 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17460.1 68414.m02141 myb family transcription factor contain...    27   1.7  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    26   4.0  
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont...    26   4.0  
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro...    25   5.3  
At1g28340.1 68414.m03481 leucine-rich repeat family protein cont...    25   5.3  
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    25   7.1  

>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 136 GSWTFLKRLSYSPY 177
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  WYSPIKTGYYPLMTSYYFPFAQRP 92
           WY+P+  GY   + ++++P    P
Sbjct: 421 WYAPLGAGYITALGAHFYPMPLPP 444


>At4g36180.1 68417.m05148 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 1136

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 56  DDFILFPIRSKAGQLQSTQRKELRSNTVLGHF*KDFRTVP 175
           D+ I   I  + G   + +  ELRSN ++GH   D   +P
Sbjct: 581 DNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLP 620


>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
           [Rhodococcus sp.] GI:8926386; contains Interpro entry
           IPR000379
          Length = 392

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 72  FPFAQRPDNYNLH 110
           FPF  RPD  NLH
Sbjct: 252 FPFLSRPDEVNLH 264


>At1g28340.1 68414.m03481 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to
           receptor-like protein kinases
          Length = 626

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 51  PLMTSYYFPFAQRPDN-YNLHSV-KNYEAIR 137
           PL T  YFP ++ P+N YN+  V K + ++R
Sbjct: 71  PLKTLRYFPISEGPNNCYNIVRVPKGHYSVR 101


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  YPLMTSYYFPFAQRPDNY 101
           +PL T  +FP+A +P+ Y
Sbjct: 339 WPLKTDDFFPYADKPNAY 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,409
Number of Sequences: 28952
Number of extensions: 51316
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,070,560
effective HSP length: 39
effective length of database: 10,941,432
effective search space used: 218828640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)