Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A16
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    29   0.25 
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    26   3.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   3.1  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   3.1  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   4.1  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   7.1  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   7.1  

>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -3

Query: 403 ITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW--TLAELNEAIANPATNPELIHYLET 230
           ++E   +LK  H   + PE  +K+      + TW      LN+AI+N  +N       + 
Sbjct: 381 LSELIDFLKREHPPEDTPEKRVKIKRIRTLLDTWQQEWRILNKAISNAESNS---GRGQN 437

Query: 229 ARTKLTSESEFQNKET 182
           ++TK TS +  +NK T
Sbjct: 438 SKTKTTSVNLSRNKRT 453


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 268 PATNPELIHYLETARTKLTSESEFQN-KETISIVTKVGLVHKVPNLQ 131
           P  +PE+ HY+++   KL     + + ++ I  VT+  LV  +  +Q
Sbjct: 161 PDYDPEIFHYMQSLERKLAPPPNYMSVQQEIDWVTRHMLVDWIVQVQ 207


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 NPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIAN---PATNP 254
           +PNY PA T    Y +  H+       + K + +A ++   +  E  EA+A     A   
Sbjct: 571 DPNYAPAYTSLGLYYRDIHD----MVRATKCFQKAFELDA-SQVEAAEALAKTFAEANEW 625

Query: 253 ELIHYLETARTKLTSESEFQNKE 185
           EL+  + + R   TSE++ + K+
Sbjct: 626 ELVEVI-SRRVLNTSENDLKRKK 647


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 262 TNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVP 140
           T+P+ I  L    T LT+E E  N + ++ VTK   V   P
Sbjct: 55  TDPDAIVELSKKCTLLTTEIEHINTDALAAVTKSVAVEPSP 95


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 247 IHYLETARTKLTSESEFQNKETISIVTKVGL 155
           + YLET  TKL       N E + ++ K+ +
Sbjct: 115 VEYLETENTKLVKTLNSLNSEFLQLLRKIAI 145


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 346 NSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKL-TSESEFQN-KETISI 173
           N   + + AM  +   +  L   +     N + +  LET RTKL T + E++   E  + 
Sbjct: 118 NRYYLALEAMIAAQDKMQALQTQVEASTNNAKAVEELETLRTKLETRDKEYETLAEKYAA 177

Query: 172 VTK 164
           VTK
Sbjct: 178 VTK 180


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 277 IANPATNPELIHYLETARTKLTSESEFQNKETISI 173
           I NP  NP L+   E AR+K   E   +NK+ ++I
Sbjct: 79  IQNPEQNPFLLSKEEAARSKQKQE---KNKDRLTI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,636
Number of Sequences: 5004
Number of extensions: 28203
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)