Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A16
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604...    28   3.0  
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875...    28   3.0  
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    27   9.2  

>03_02_0161 +
           6046949-6047063,6048759-6048844,6049029-6049094,
           6049408-6049860,6049960-6050115,6050319-6050465,
           6050570-6050641,6050730-6051293
          Length = 552

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = -3

Query: 397 ESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTK 218
           E  + ++  HE     E S +  V  ++  T T+AEL E+I +       + + +    K
Sbjct: 231 ELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDVANAVRFYQNQAAK 290

Query: 217 LTSESEFQNKE 185
           L  E     +E
Sbjct: 291 LNEEKRTLERE 301


>01_06_0880 +
           32687018-32687060,32687142-32687219,32687323-32687532,
           32687868-32689744
          Length = 735

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 232 TARTKLTSESEFQNKETISIVTKVGLVHK 146
           TA   +T E    NK++ ++V K+ LVHK
Sbjct: 130 TASVSITIEDTTSNKDSSTLVEKIKLVHK 158


>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 349 ENSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIV 170
           EN++K+ +  +D     L +        A    L   LE  RTKL SE++    E   I+
Sbjct: 453 ENNLKMEILPVDDLDIALHDFVSKDDKMAFYACLQRNLEETRTKLNSEADKFKIEEEDII 512

Query: 169 TKVG 158
            KVG
Sbjct: 513 VKVG 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,111,771
Number of Sequences: 37544
Number of extensions: 155649
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)