Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A16
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_30222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)                      29   1.8  
SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)                      29   1.8  
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)                  29   2.3  
SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_25870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.5  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  27   9.5  
SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 418 NYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           N +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 48  NPVPNEEEAAEYEQHLHEENEQEEELLRRFSREQDISTW 86


>SB_30222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 442 IKDPCANPNYLPAITESYRYLKSTH--EHGNKPENSIKVYVRA 320
           IK+PC  P     +  SY+YL   H  +HGN      K+++ +
Sbjct: 55  IKEPCHRPIIEYELCVSYQYLFIEHGTQHGNSDNTHTKIHLES 97


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 412  LPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
            +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 2410 VPNEEEAAEYKQQLHEENEQEEELLRRFSREQDISTW 2446


>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 420

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 412 LPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 240 VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 276


>SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 227

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 412 LPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 47  VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83


>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
          Length = 424

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 412 LPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 47  VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83


>SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 412 LPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 302
           +P   E+  Y +  HE   + E  ++ + R  DISTW
Sbjct: 15  VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 51


>SB_25870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 433 PCANPNYLPAITESYRYLKSTHEHGNKPENSIKVY 329
           PC +P Y+P I +   YL+  HE   K     K+Y
Sbjct: 28  PCLSP-YVPQIGDEVYYLRQGHERYVKEVMRRKIY 61


>SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 394 SYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIANPATNPELIH 242
           S+R +    E G  PE+SI+     M++ +W       A+ +  T   + H
Sbjct: 302 SFRDVLKAVEDGAVPEDSIRFGTEVMELDSWARRRQYGALKDTLTTGTVTH 352


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 388 RYLKSTHEHGNKPENSI-KVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLT 212
           ++ K+    G KP ++  + +   M+       E  EA+    T      + ++ +T + 
Sbjct: 531 KFNKTASLVGQKPHSAAGEDHWSGMEWEEGGAMEKGEAVEKTLTKLSNPGFTQSMKTAMQ 590

Query: 211 SESEFQNKETISI-VTKVGLVHK 146
           S ++F+ KET+   V K GL  K
Sbjct: 591 SVNDFEEKETVETGVNKRGLDRK 613


>SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = -3

Query: 421 PNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLA---ELNEAIANPATN-P 254
           P +LPA  ++ R ++  H   N P    K    +++    TL+   E  +  A P  N P
Sbjct: 184 PQHLPAFHQTERPIQYVHRESNHPPTITKNIPASINKRLSTLSSDKETFDQAAPPYQNAP 243

Query: 253 ELIHYLETARTKLTSESEFQNKETISIV 170
           E   Y  T   +  + S+ +N++  +I+
Sbjct: 244 EESGYNYTLHYEPNTTSKRKNRQRNNII 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,095,089
Number of Sequences: 59808
Number of extensions: 195536
Number of successful extensions: 485
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)