Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A16
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   2.7  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 213 HRNLSFKIRRQSALLQKWVLYTRCQTCNQSILMKYLKKV 97
           H  + +KIR Q A+ +   LY   +  N   L+KYL+K+
Sbjct: 59  HSLIEYKIRLQVAVKRYGFLYVITEYINGGDLLKYLRKL 97


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 337 KVYVRAMDISTWTLAELNEAIANPATNP--ELIHYLETARTKLTSESEFQN 191
           K+  RAMDI    +A L+E + NP+ +   E+I   E  R   +   E Q+
Sbjct: 439 KLRTRAMDIDQQRIALLDEKLDNPSVDDVREIIFLREIMRRVWSINRELQD 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,411,523
Number of Sequences: 27780
Number of extensions: 157310
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)