Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A16
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.29 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.38 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.38 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.38 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   2.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   2.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   2.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   2.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   2.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.2  

>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VIVIRRTGEGSKPLFEREEIKNVLTKINKIEEQDTVL 196

Query: 130 PVNLDEIFKKS 98
            VN+++  K+S
Sbjct: 197 VVNIEKSGKES 207


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 132 STTTTVEVKRDIINPED------VIVIRRTGEGSKPLFEREEIKNVLTKINKIEEHDTVL 185

Query: 130 PVNLDEIFKKS 98
            VN+++  K+S
Sbjct: 186 VVNIEKSGKES 196


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VIVIRRTGEGSKPLFEREEIKNVLTKINKIEEHDTVL 196

Query: 130 PVNLDEIFKKS 98
            VN+++  K+S
Sbjct: 197 VVNIEKSGKES 207


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 132 STTTTVEVKRDIINPED------VIVIRRTGEGSKPLFEREEIKNVLTKINKIEEHDTVL 185

Query: 130 PVNLDEIFKKS 98
            VN+++  K+S
Sbjct: 186 VVNIEKSGKES 196


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIEEHDTVL 196

Query: 130 PVNLDE 113
            VN+++
Sbjct: 197 VVNIEK 202


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 196

Query: 130 PVNLDE 113
            VN+++
Sbjct: 197 VVNIEK 202


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 196

Query: 130 PVNLDE 113
            VN+++
Sbjct: 197 VVNIEK 202


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 196

Query: 130 PVNLDE 113
            VN+++
Sbjct: 197 VVNIEK 202


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 132 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 185

Query: 130 PVNLDE 113
            VN+++
Sbjct: 186 VVNIEK 191


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 148 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 201

Query: 130 PVNLDE 113
            VN+++
Sbjct: 202 VVNIEK 207


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 196

Query: 130 PVNLDE 113
            VN+++
Sbjct: 197 VVNIEK 202


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 310 STWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQ 131
           ST T  E+   I NP         +   RT   S+  F+ +E  +++TK+  + +   + 
Sbjct: 143 STTTTVEVKRDIINPED------VILIRRTGEGSKPIFEREEIKNVLTKINKIKEHDTVL 196

Query: 130 PVNLDE 113
            VN+++
Sbjct: 197 VVNIEK 202


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 448 EAIKDPCANPNYL 410
           EA+KD   +PNY+
Sbjct: 528 EAVKDTXCDPNYV 540


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = -3

Query: 196 QNKETISIVTKVGLVHKVPNLQPVN 122
           QN+ET+ ++  + ++  +P    +N
Sbjct: 349 QNEETLQMIVSMKIMENLPQSGRIN 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,788
Number of Sequences: 438
Number of extensions: 2035
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)