Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A16
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase...    30   0.83 
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB...    29   1.9  
At3g55600.1 68416.m06175 expressed protein predicted proteins, A...    28   2.5  
At3g30560.1 68416.m03867 hypothetical protein                          28   3.4  
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put...    27   5.9  
At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein ...    27   5.9  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    27   7.7  
At1g21670.1 68414.m02712 expressed protein similar to TolB prote...    27   7.7  

>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
           putative / ADP-glucose pyrophosphorylase, putative
           (APS2) similar to SP|P52416 from [Vicia faba]; contains
           Pfam profile PF00483: Nucleotidyl transferase; identical
           to cDNA GI:31408039
          Length = 476

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 219 LVRAVSK*CINSGFVAGFAIASFNSANVQVDMSIA 323
           L+ AV   CINSG    +AI  FNS ++   +S A
Sbjct: 88  LIDAVISNCINSGITKIYAITQFNSTSLNSHLSKA 122


>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
           identical to anthranilate synthase beta subunit
           GI:403434 from [Arabidopsis thaliana]
          Length = 276

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 301 TLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKV 161
           T   LN ++ NP TNP  +  L  +R  + +++  +  E+ SI + V
Sbjct: 19  TTRRLNPSLVNPLTNPTRVSVLGKSRRDVFAKASIEMAESNSIPSVV 65


>At3g55600.1 68416.m06175 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 240

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 298 LAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTK 164
           L  L  A  N     +L+HY+ T R +L   SE +  E +  VTK
Sbjct: 11  LRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTK 55


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 174 LLQKWVLYTRCQTCNQSILMKYLKKVIKQ 88
           LL+K+  +   + CNQS+ +KYL K + +
Sbjct: 679 LLRKYRAHINVEWCNQSVSVKYLFKYVNK 707


>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
           putative strong similarity to anthranilate synthase beta
           chain GI:403434 [Arabidopsis thaliana]
          Length = 273

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 304 WTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKV 161
           +T   LN+++ N  TNP  +  L  +R  + +++  +  E+ SI + V
Sbjct: 18  FTTRRLNQSLVNSLTNPTRVSVLWKSRRDVIAKASIEMAESNSISSVV 65


>At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 365

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 244 HYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQPVNLDEIFKKSN 95
           HYL           +F ++ T+ ++   G  HK+  ++  N+  IFK  N
Sbjct: 145 HYLSNHSVVRLLAGDF-SRTTVELICNTGYSHKLGKMKGNNISAIFKIQN 193


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
            similar to SP|Q05022 rRNA biogenesis protein RRP5
            {Saccharomyces cerevisiae}; contains Pfam profile
            PF00575: S1 RNA binding domain
          Length = 1838

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 385  YLKSTHEHGNKPENSI-KVYVRA 320
            Y    +EHGN PE S+ KV+ RA
Sbjct: 1634 YFNLENEHGNPPEESVKKVFERA 1656


>At1g21670.1 68414.m02712 expressed protein similar to TolB protein
           precursor (SP:P50601) {Pseudomonas aeruginosa}
          Length = 703

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 409 PAITESYRYLKSTHEHGNKPENS-IKVYVRAMDI-STWTLAELNEAIANPATNP 254
           P +T  Y    STHE+  KP  S   VY   +   ST  L  L  A  +PA +P
Sbjct: 151 PVLTNGYLVHVSTHENPGKPMASWAAVYSTELRTKSTRRLTPLGIADFSPAVSP 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,796,396
Number of Sequences: 28952
Number of extensions: 139289
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)