Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A15
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 299 1e-82
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 167 7e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 153 1e-38
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 116 3e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 97 2e-21
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 1e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 84 1e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 1e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 34 0.015
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.11
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.58
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 2.3
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 3.1
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 4.1
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 5.4
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 5.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.2
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 299 bits (735), Expect = 1e-82
Identities = 135/150 (90%), Positives = 143/150 (95%)
Frame = +3
Query: 90 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 269
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 270 RGILTLKYPIEHGIVTNWDDLEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMTQ 449
RGILTLKYPIEHGIV NWDD+EKIWHHTFYNELRVAPEEHP LLTEAPLNP++NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 450 XMFETFNTPAMYVAXQAVLSLYASGRTTGI 539
+FETFN PA YVA QAVLSLYASGRTTGI
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGI 151
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 167 bits (407), Expect = 7e-43
Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 288 KYPIEHGIVTNWDDLEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPEANREKMTQXMFET 464
+ PIE GI+ NW D+E+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 465 FNTPAMYVAXQAVLSLYASGRTTGI 539
N PA+ + Q VL+LYAS RTTGI
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGI 156
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 153 bits (372), Expect = 1e-38
Identities = 71/150 (47%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
Frame = +3
Query: 96 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 269
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 270 RGILTLKYPIEHGIVTNWDDLEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMTQ 449
R +L +KYP+E+GI+ +++++ ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 450 XMFETFNTPAMYVAXQAVLSLYASGRTTGI 539
MFE + +YVA QAVLSLYA G ++G+
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGV 151
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 116 bits (278), Expect = 3e-27
Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 24/162 (14%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 236
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 237 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDLEKIWHHTFYNELRVAPEEHPV 395
D ++G++A K +L YPI HG + NWD +E+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 396 LLTEAPLNPEANREKMTQXMFETFNTPAMYVAXQAVLSLYAS 521
LLTE PLNP NRE + MFE+FN +Y+A QAVL+L AS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 96.7 bits (230), Expect = 2e-21
Identities = 53/147 (36%), Positives = 80/147 (54%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 273 GILTLKYPIEHGIVTNWDDLEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMTQX 452
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 453 MFETFNTPAMYVAXQAVLSLYASGRTT 533
MFE+ PA Y+A Q + +ASG+ T
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGT 147
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 87.4 bits (207), Expect = 1e-18
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 273 GI--LTLKYPIEHGIVTNWDDLEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMT 446
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 447 QXMFETFNTPAMYVAXQAVLSLYASGRTTGI 539
+ FE + PA Y+ QAV +A+ ++T +
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTAL 152
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 84.2 bits (199), Expect = 1e-17
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 288 -KYPIEHGIVTNWDDLEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMTQXMFET 464
+ P E +++NWD +E++ +TF +L + EHP+ +TE NP R MT+ +FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 465 FNTPAMYVAXQAVLSLY 515
+N P++ + S Y
Sbjct: 142 YNAPSVAYGIDGLFSFY 158
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +3
Query: 294 PIEHGIVTNWDDLEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPEANREKMTQXMFE 461
PI+ G V +W+ L+ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 462 TFNTPAMYVAXQAVLSLYASGRTTGI 539
P +A + ++ LYA G G+
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGL 197
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.9 bits (74), Expect = 0.015
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 288 KYPIEH--GIVTNWDDLEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPEANREKMTQXM 455
++ H G + +W +W N + P ++ +LLT+ + Q +
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 456 FETFNTPAMYVAXQAVLSLYASGRTT 533
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 153 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 296
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 354 FYNELRVAPEEHPVLLTE--APLNPEANREKMTQXMFETFNTP 476
+Y L E+HP+LLT+ A L P + ++ + ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 250 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 89
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 396 LLTEAPLNPEANREKMTQXMFETFN 470
+L APL+ E +KM + +FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 349 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 435
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 340 SGITPSTMSCV*LPRSTQSCSPKLPSTPKPTERR*HRXCSRPSTHPP 480
S T S +S + R ++S LPSTP PT P+ + P
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNANSP 445
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 340 IFSKSS--QLVTMPCSMGYLSVRIPLLLCASSPT*ESF 233
IFSK +L+ MP S + R P L+C + T E+F
Sbjct: 493 IFSKIGHPKLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 100 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 192
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 213 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 299
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 120 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 272
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 291 YPIEHGIVTNWDDLEKIWHHTFYNELRVAPE 383
YP G++ +W +LE + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 401 HRSSPQPRSQQREDDTDXVRDLQHTRHVRSXPGRALTV 514
H S+ + +ED+T D+ R++R PG TV
Sbjct: 78 HHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTV 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,387
Number of Sequences: 5004
Number of extensions: 48160
Number of successful extensions: 149
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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