Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A14
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    69   3e-13
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    29   0.44 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.3  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
 Frame = +1

Query: 1   SIPYFWEKFDPEHYSIWYCQYKYPEELAKVS*AVT--*SPAVQRLDRCXXXXXXXXXXXX 174
           ++P+F+E FDPE+YS+W   Y YPE+L +             QRL+              
Sbjct: 281 ALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIG 340

Query: 175 XXXXXXXXXVWVWRGHEL--AFPLSPDWQIDYESYEWTKLDPHSPDTKALLRDYFSWTGT 348
                     +V +GH+   AF ++PDW     SY +TKLD + P+ KA + D ++W   
Sbjct: 341 ENGDNTITGAFVIKGHDYVPAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAW-DK 395

Query: 349 DQDGRKFNQGKIFK 390
             +GR+   GK+ K
Sbjct: 396 PIEGREVADGKVCK 409


>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 199 PEMVESLSPPKRQTEAKACLRICRGAGQPVIRLQLMTLWPAPP 71
           P M+ES+    ++ E K   +I   +  PV  L L+TL P  P
Sbjct: 59  PNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKP 101


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 202 VWVWRGHELAFPLSPDWQIDYESYEWTKL 288
           ++V  GH    PLS  W  D E+  WT++
Sbjct: 260 IFVHGGHNDTGPLSDLWLFDLETLSWTEV 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,760
Number of Sequences: 5004
Number of extensions: 30877
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)