Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A14
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 58 3e-09
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 57 1e-08
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 28 5.4
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 27 7.2
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 27 9.5
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920 27 9.5
03_05_0503 - 24952770-24953846,24953961-24954641,24954730-249548... 27 9.5
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 27 9.5
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 1 SIPYFWEKFDPEHYSIWYCQYKYPEELAKVS*AVT*SPA---VQRLDRCXXXXXXXXXXX 171
+I FW+ +DPE YS+W+C YKY +E VS VT + +QR+D C
Sbjct: 295 AIKGFWDMYDPEGYSLWFCDYKYNDE-NTVS-FVTMNKVGGFLQRMDLCRKYAFGKMLVI 352
Query: 172 XXXXXXXXXXVWVWRGHELAFPLSPDWQIDYESYEWTKLD 291
+W++RG E+ D D E YEWTK+D
Sbjct: 353 GSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTKVD 391
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 1 SIPYFWEKFDPEHYSIWYCQYKYPEELAKVS*AVT*SPA---VQRLDRCXXXXXXXXXXX 171
+I FW+ +DPE YS+W+C YKY +E VS VT + +QR+D C
Sbjct: 860 AIKGFWDMYDPEGYSLWFCDYKYNDE-NTVS-FVTMNKVGGFLQRMDLCRKYAFGKMLVI 917
Query: 172 XXXXXXXXXXVWVWRGHELAFPLSPDWQIDYESYEWTKLD 291
+W++RG E+ D D E YEWTK+D
Sbjct: 918 GSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTKVD 956
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/97 (30%), Positives = 45/97 (46%)
Frame = +1
Query: 1 SIPYFWEKFDPEHYSIWYCQYKYPEELAKVS*AVT*SPAVQRLDRCXXXXXXXXXXXXXX 180
+I FW+ +DPE YS+W+C YKY +E V+ +R+D C
Sbjct: 312 AIKGFWDMYDPEGYSLWFCDYKYNDEN-----TVSFVTMNKRMDLCRKYAFGKMLVIGST 366
Query: 181 XXXXXXXVWVWRGHELAFPLSPDWQIDYESYEWTKLD 291
+W++RG ++ D D E YEWTK+D
Sbjct: 367 PPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVD 402
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 328 YFSWTGTDQDGRKFN-QGKIFK*TGRLTPHISHLTHLT 438
+F T DQD R N Q K+ K T + P + HL +T
Sbjct: 5 FFRGTSADQDTRFSNKQAKLLK-TQKFAPELEHLVDMT 41
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 200 AGDGGVVVASEEADGGE 150
A DG V +AS EADGGE
Sbjct: 321 AQDGAVALASTEADGGE 337
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 227 SSWPRQTHTAGDGGVVVASEEADGGEGLLAHLSRRWTAGDQVTAHDTLASSSG 69
S P + GDGG A+ GG + + + AGD + T +SS+G
Sbjct: 98 SGTPPAKGSGGDGGGAPANNSTSGGAPANSAVEQSSPAGDGGGSPSTASSSAG 150
>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
Length = 128
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 282 QARPPQPRHQGAAPRLLLLDRHRPG 356
+A PP PR QG PR L R PG
Sbjct: 66 RAVPPPPRQQGEPPRAEALRRLVPG 90
>03_05_0503 -
24952770-24953846,24953961-24954641,24954730-24954882,
24955041-24955043
Length = 637
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 42 LHLVLPVQVPGGAGQSVMSCNLITGCPAPRQMRKQAFAS 158
+ ++LP+ VP G+ +S S +L G R ++ + AS
Sbjct: 32 IEIILPLSVPNGSAESAPSLHLTLGMVELRAFQETSDAS 70
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 247 DWQIDYESYEWTKLDPHSPDTKALLRD 327
D++ D E PHSPD +AL R+
Sbjct: 312 DYRFDVSKLEPVIAKPHSPDNRALARE 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,824
Number of Sequences: 37544
Number of extensions: 257464
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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