Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A14
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 49   2e-06
SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  44   1e-04
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  27   7.3  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      27   7.3  
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)                    27   9.7  
SB_932| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-11)           27   9.7  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 238 LSPDWQIDYESYEWTKLDPHSPDTKALLRDYF-SWTGTDQDGRKFNQGKIFK 390
           L+ DW +D  SY   +L+P  P  K L+ DYF         G+KFNQGK+FK
Sbjct: 152 LNEDWNVDAPSYTSRRLNPDDPADKKLIEDYFIQREELTYRGKKFNQGKVFK 203


>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +1

Query: 1   SIPYFWEKFDPEHYSIWYCQYK--YPEELAKV 90
           +IPYFWE FD E YS+W+ +YK  Y ++L  V
Sbjct: 21  AIPYFWENFDKEGYSLWFLEYKEEYEKDLGMV 52



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  GQSVMSCNLITGC-PAPRQMRKQAFASVCLFGGDNDSTIS 197
           G   M+CNL+ G      ++ K  F S+C+FG +++ +I+
Sbjct: 50  GMVFMACNLVGGMIQRLEKLVKNGFGSICIFGENHNCSIA 89


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -1

Query: 199 PEMVESLSPPKRQTEAKACLRICRGAGQPVIRLQLMTLWPAPPGTCTGSTRWSSARDQTS 20
           P +  + S   R +  ++ LR  RG  QP       T +P  P T       S   +Q  
Sbjct: 425 PPLPRATSQRNRSSTNESYLRASRGTSQPYPSQSQNTAYPESPDTPQPQASSSFLPEQPR 484

Query: 19  PRS 11
           PRS
Sbjct: 485 PRS 487


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 51  VLPVQVPGGAGQSVMSCNLITGCPAPRQMRKQAFASVCLF 170
           V+ +  PGG  QS+ S N I G PA +   K   A V  +
Sbjct: 26  VIRLSSPGGVDQSLWSPNKILGIPATKLRVKLRLAGVSFY 65


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 57   PVQVPGGAGQSVMSCNLITGCPAPRQMRKQAFASVCLFG 173
            PVQ+PGG G S+    ++T   A  +M   +   V ++G
Sbjct: 1617 PVQLPGGVGASIAVEKIVTQVSADDEMVLPSACDVLIWG 1655


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 291 PPQPRHQ-GAAPRLLLLDRHRPGRPQVQPGQ 380
           P +P H+ G  P  L    H PGRP  +PG+
Sbjct: 385 PGRPPHEPGRPPHELGRPPHEPGRPPHEPGR 415


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 291 PPQPRHQ-GAAPRLLLLDRHRPGRPQVQPGQ 380
           P +P H+ G  P  L    H PGRP  +PG+
Sbjct: 151 PGRPPHEPGRPPHELGRPPHEPGRPPHEPGR 181


>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 807

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 383 ILPWLNLRPSWSVPVQE 333
           + P+LN+RPS ++PV+E
Sbjct: 711 LTPFLNIRPSTNIPVEE 727


>SB_932| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-11)
          Length = 665

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 383 ILPWLNLRPSWSVPVQE 333
           + P+LN+RPS ++PV+E
Sbjct: 539 LTPFLNIRPSTNIPVEE 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,974
Number of Sequences: 59808
Number of extensions: 266766
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)