Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A14
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ...    55   3e-08
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ...    55   3e-08
At3g56990.1 68416.m06344 glycine-rich protein conserved hypothet...    29   1.5  
At1g44760.1 68414.m05128 universal stress protein (USP) family p...    28   4.5  
At4g13430.1 68417.m02096 aconitase family protein / aconitate hy...    27   6.0  

>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative similar to elongation factor 1B
           gamma GI:3868758 from [Oryza sativa]
          Length = 413

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   SIPYFWEKFDPEHYSIWYCQYKYPEE-LAKVS*AVT*SPAVQRLDRCXXXXXXXXXXXXX 177
           +I  FW+ +DPE YS+W+C YKY +E +            +QR+D               
Sbjct: 285 AIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGS 344

Query: 178 XXXXXXXXVWVWRGHELAFPLSPDWQIDYESYEWTKLD 291
                   +W++RG E+      D   D E YEWTK+D
Sbjct: 345 EGPFKVKGLWLFRGPEIP-KFIMDEVYDMELYEWTKVD 381


>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative Similar to elongation factor
           1-gamma (gb|EF1G_XENLA). ESTs
           gb|T20564,gb|T45940,gb|T04527 come from this gene
          Length = 414

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   SIPYFWEKFDPEHYSIWYCQYKYPEE-LAKVS*AVT*SPAVQRLDRCXXXXXXXXXXXXX 177
           +I  FW+ +DPE YS+W+C YKY +E +            +QR+D               
Sbjct: 286 AIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGS 345

Query: 178 XXXXXXXXVWVWRGHELAFPLSPDWQIDYESYEWTKLD 291
                   +W++RG E+      D   D E YEWTK+D
Sbjct: 346 EGPFKVKGLWLFRGPEIP-KFIMDEVYDMELYEWTKVD 382


>At3g56990.1 68416.m06344 glycine-rich protein conserved
           hypothetical protein SPCC330.09 - Schizosaccharomyces
           pombe, PIR:T41319
          Length = 711

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 241 SPDWQIDYESYEWTKLDPHSPDTK--ALLRDYFSWTGTDQD 357
           +PD+QID +SYE+  L P +   K  +LL ++F     D +
Sbjct: 510 NPDFQIDKDSYEYGVLHPVASSKKQPSLLDEHFEAVSDDDE 550


>At1g44760.1 68414.m05128 universal stress protein (USP) family
           protein contains Pfam profile PF00582: universal stress
           protein family
          Length = 213

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 131 SRRWTAGDQVTAHDTLASSSGY 66
           S+RWT+GD  TA +   S  GY
Sbjct: 22  SKRWTSGDSSTAFNDDTSGGGY 43


>At4g13430.1 68417.m02096 aconitase family protein / aconitate
           hydratase family protein contains Pfam profile PF00330:
           Aconitase family (aconitate hydratase
          Length = 509

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 247 DWQIDYESYEWTKLDPHSPDTKALLRD 327
           D++ D    E     PHSPD +AL R+
Sbjct: 336 DYRFDVSKLEPVVAKPHSPDNRALARE 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,933,366
Number of Sequences: 28952
Number of extensions: 182158
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)