Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A13
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.70 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    29   0.70 
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    28   0.93 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.8  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.5  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   8.6  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   8.6  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 448 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 555
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 132 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 254
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +3

Query: 117 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 263
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 285 DNRFCTISRILQQLSYWCSYRCW 217
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 15  KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 182
           K ++  A +I   +++  +   +H   +D   V  + QK+      S   D D+  V DE
Sbjct: 28  KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87

Query: 183 YYKIGKDYDVEA 218
           + +I +++ ++A
Sbjct: 88  FMQIKEEFPMKA 99


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 150 QDVDQVNVDDEYYKIGKDYDVEANIDN 230
           Q+V Q+N +DEY +   + D EA IDN
Sbjct: 55  QNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 117 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 266
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 213 EANIDNYTNKKAVEEFLKLYRIGYLPK 293
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 420 NEGQFL-YAYYIAVIQRNDTHG 482
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,606
Number of Sequences: 5004
Number of extensions: 48880
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)