Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A13
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    32   0.37 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    32   0.37 
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   2.0  
AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC024804-7|AAF60744.1|  322|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z35663-8|CAA84728.1|  249|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    29   3.5  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 87  FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 260
           F+T++    +V+  + KKV S F +    +  D YY + + + V      +TN   V+E 
Sbjct: 37  FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88

Query: 261 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 374
           +K Y     P + ++S       EEAIA FH +Y  K+
Sbjct: 89  IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 87  FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 260
           F+T++    +V+  + KKV S F +    +  D YY + + + V      +TN   V+E 
Sbjct: 37  FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88

Query: 261 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 374
           +K Y     P + ++S       EEAIA FH +Y  K+
Sbjct: 89  IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 6   QTMKTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLS---LFQDVDQVNVD 176
           Q M  +   +GL+  +QS ++   +  F  K++DA+  +  K+ L+   +F  +D V  D
Sbjct: 288 QKMAPMSTSSGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANYLIFHFIDAVTFD 347


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 141  SLFQDVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLPKY 296
            S+  DV ++++DD+Y+ +G  +D +   D        + AV  F  L+R    +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599


>AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical
          protein Y51H7BR.1 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 3  QQTMKTVLVLAGLIALVQSSVVSPKTYHF 89
          Q+T+K V++  G I L+ +S++S KT HF
Sbjct: 11 QKTLKNVILQMGHIELICTSLLSNKTKHF 39


>AC024804-7|AAF60744.1|  322|Caenorhabditis elegans Hypothetical
          protein Y51H7BR.2 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 3  QQTMKTVLVLAGLIALVQSSVVSPKTYHF 89
          Q+T+K V++  G I L+ +S++S KT HF
Sbjct: 11 QKTLKNVILHMGHIELICASLLSNKTKHF 39


>Z35663-8|CAA84728.1|  249|Caenorhabditis elegans Hypothetical
           protein T04A8.9 protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 132 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 260
           KVL L Q   Q ++   YYK+ K +  + N  N   ++A ++F
Sbjct: 27  KVLGLAQSASQKDIKSAYYKLSKQHHPDTNPTN--KEEAAKKF 67


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 334 RLLLFSTCSTMLKTLKPSTRVPLSLV 411
           R+  F TCS  +KT+K    +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +1

Query: 373 TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 540
           T  P T  PLS+ CT ++  S   ++ +++   + +DS +  ++  +H   +  T+
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 309 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 220
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 309 IFYQKLREEAIALFHLFYYAKDFETFYKSA-AFARVHLNEGQFLYAYYIA 455
           +FY       IA F  + Y K  +T YKSA AF R  L  G+FL AY +A
Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL-AYALA 148


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
          protein F40G9.12 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 8  NYEDCPSSSGAHCPRAIQCGVT 73
          NYE    +SG HCPR + CG T
Sbjct: 25 NYE----TSGDHCPRVLSCGHT 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,923
Number of Sequences: 27780
Number of extensions: 272708
Number of successful extensions: 739
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)