Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A13
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 29 2.4
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 29 3.2
At4g22320.1 68417.m03227 expressed protein 28 5.6
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to... 28 5.6
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa... 28 5.6
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 27 7.4
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 27 7.4
At5g27230.1 68418.m03248 expressed protein ; expression support... 27 9.8
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 27 9.8
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +3
Query: 120 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 293
E+ +K+L+ Q +DQ+ D+ K+G Y EA IDN ++ +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 294 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 437
EF +F Q + +F +F ++ F + + + L E +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 168 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 278
N +DEY K DYD +D T K+A + L + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 96 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 257
K V +E QKK ++ ++ D++ DD KI +D VE D K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164
>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 45 ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 197
++V S VV Y F V + E +KK+ F + DQ DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356
>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1228
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 407 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 261
S SG ++E +KV +++E K + + E+G++++L K DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 302 LIVLGKITDSVQFQEFFNSFLIGVVI 225
++V G ITD++ F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 302 LIVLGKITDSVQFQEFFNSFLIGVVI 225
++V G ITD++ F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 102 VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 266
V A+ +E+++K L L + + E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At3g57300.1 68416.m06378 transcriptional activator, putative
similar to transcriptional activator SRCAP [Homo
sapiens] GI:5106572; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 1507
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 405 ARVHLNEGQFLYAYYIAVIQRNDTHGFV 488
AR L+EG L +Y+ ++++ DT+ V
Sbjct: 295 ARTILSEGGVLQVHYVKILEKGDTYEIV 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,556,986
Number of Sequences: 28952
Number of extensions: 249260
Number of successful extensions: 642
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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