Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A12
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   1.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   2.6  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    26   3.4  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   4.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   4.5  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.8  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 32  DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKI 205
           D +R +D  +      ++ L Y +A+    V   + + A W    NIN   NE  + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 102 WKYNKEISICFFANST 55
           WKYN ++  C+  NST
Sbjct: 116 WKYNPDLDYCYLDNST 131


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  VRTDDSVEFAKKQIDISLLYF 100
           ++ D +V+ +KKQI  SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 58  RVREKADRYFLIILPCSRTKSRFEIYNYF 144
           ++R+ A +   II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 50  DSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVK 202
           +S+    K +  S+L + A++ N+    +  S+ WSI  N + Y+N   +K
Sbjct: 98  NSIHNQLKDLSSSILSY-AQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLK 147


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 143 SASWSIENNINHYKNETAVKI 205
           + SWS  ++  HYKNE A  I
Sbjct: 276 NGSWSSTDDTKHYKNEWAESI 296


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 73  ADRYFLIILPCSRTKSRFEIYNYFR 147
           A++Y + + PC+ T  +FE++  ++
Sbjct: 94  AEKYSVTMEPCTYTDEKFEVFKKYQ 118


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 29  CDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNET 193
           C P+  DDS+    K+ D  LL F   E  HVS +  ++A W  E NI+    ET
Sbjct: 178 CAPIDLDDSII---KRDD--LLSFCNVEV-HVSPNAILNACWLSERNIHTDLYET 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,783
Number of Sequences: 5004
Number of extensions: 40950
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)