Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A12
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              27   8.0  

>SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 275 HQFEAVIMFNVLYSAKDYDTFYKTTVY--MKDRVNQDLYIYVLSTLHIHR 418
           HQF   I+F+ ++    Y TF +        DR+  DL +Y +S   I R
Sbjct: 9   HQFPFNILFHKMFITHFYSTFIELAQLHDQHDRLELDLILYAISDALIIR 58


>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 334 CVVVFSGIQDIEHYDSFKL 278
           C VVFSGIQ  + YD +K+
Sbjct: 409 CGVVFSGIQIAKEYDFYKM 427


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 269  PTHQFEAVIMFNVLYSAKDYDTFYKTTVYMKDRVNQDLYIYV 394
            P H F A +  +   + K YD+ Y T +Y   RV Q  Y Y+
Sbjct: 899  PRHLFHAYLHHDTRTTGK-YDS-YSTRIYTTTRVRQLFYAYL 938


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,737
Number of Sequences: 59808
Number of extensions: 268937
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)