Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A10
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    27   2.5  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   3.3  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   4.4  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   4.4  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    26   5.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   5.8  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   5.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   5.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.7  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   7.7  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   7.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.7  

>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = +1

Query: 229 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTV 408
           NSIF    Q PTT+   T T +  S V   N     G  +T P    S    PT+     
Sbjct: 64  NSIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVDET 123

Query: 409 N 411
           N
Sbjct: 124 N 124


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 142 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKI 246
           K+YR L I+ LVGS     ++ D+ +   +S+ +I
Sbjct: 330 KLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRI 364


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 250 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGR 342
           + +PT T  P + VS PSA P  + + N  +
Sbjct: 164 SSSPTNTPSPNLPVSQPSASPHYSGDKNSAK 194


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 535 IPPPDR--F**CTAYRWYLQSELLL 467
           +PPP+R  +  C   RWY   ELLL
Sbjct: 203 LPPPNRREYTGCVVTRWYRSPELLL 227


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 244 IPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 414
           IPN   T       + SAP+   TV++  ++ +  T   D  +    P  AP ++ P
Sbjct: 145 IPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTP 201


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = -2

Query: 300 WGTNSH-----GWFLSSCWCLIRYFENAVYFFEVYIIGVCL 193
           WG   H      W ++  WCL   F + + +F V   GV L
Sbjct: 349 WGMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLL 389


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 447 GWFLSSSGDGYRIDCSRSLRRYFENTVYIIGV 352
           GW LS      R+   + LR++FE   +I G+
Sbjct: 337 GWMLSDINTTVRLTVVKVLRKFFETDSFIGGL 368


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 274 KPTMTVSAPSAVPT 315
           KPT T SAPSA PT
Sbjct: 292 KPTATTSAPSASPT 305


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 232 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNG 330
           S F+ PN+AP+T  +      +P+     NTNG
Sbjct: 295 SNFRSPNRAPSTNNRYRGWNGSPTPAAGNNTNG 327


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -2

Query: 177 DQYQDS*YSVHLSTVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFV 16
           D   D  Y++ L  +C F +       T+ S +   +    + +CFL++   F+
Sbjct: 180 DDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFL 233


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 142 KMYRILAILVLVGSAHAQANANDIDLEEINSIFK--IPNQAPTTTKKPTMTV 291
           K+ ++ + +    +AHA  NANDI    +N   K  +    P  +KK  +++
Sbjct: 43  KVVQLRSFIPFKNAAHALENANDISEGVLNDFLKNFLELNLPKASKKKKVSL 94


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 138 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFI 25
           TV ++ Y+I   + T+  N     FL  VS+C +I+ +
Sbjct: 45  TVPKWAYKIVTYSLTIQFNFKSLLFLFFVSICVVILVV 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,876
Number of Sequences: 5004
Number of extensions: 58740
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)