Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A10
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_53827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)           29   3.5  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   3.5  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              25   4.1  
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)               29   4.6  
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     28   6.1  
SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)                   28   6.1  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_6912| Best HMM Match : rve (HMM E-Value=4.8e-35)                    28   8.0  

>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
 Frame = +1

Query: 241 KIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQ-APGTVNPV 417
           K    APT T  PT+T + P   PT           T P         PTQ  P    P 
Sbjct: 2   KFTPTAPTLTT-PTLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPS 60

Query: 418 XXXXXXXXXXXXESAPSAIVPTVNTNDTPCITK 516
                          P+   P   T  T  +TK
Sbjct: 61  PTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTK 93


>SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +1

Query: 214 DLEEINSIFKIPNQ-APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP----DDINSVF 378
           D+E  ++++   N  +P+   K  + VSA +    +   GN+G  +  P    + I+ +F
Sbjct: 61  DIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQVPLLWANTISEIF 120

Query: 379 KIPTQAPGT--VNPV 417
           K PT       +NP+
Sbjct: 121 KEPTHKMTVMMINPI 135


>SB_53827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 471 C*WGTFNGG--WFLSSSG-DGYRIDCSRSLRRYFENTVYIIGVCIIASSITV 325
           C W T   G  W +   G D ++ID   ++   F   V +I  C++   I++
Sbjct: 142 CEWSTIINGVFWHIIEGGNDKFKIDLFSAINADFAAAVILISYCVVLGKISI 193


>SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +1

Query: 214 DLEEINSIFKIPNQ-APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP----DDINSVF 378
           D+E  ++++   N  +P+   K  + VSA +    +   GN+G  +  P    + I+ +F
Sbjct: 61  DIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQVPLLWANTISEIF 120

Query: 379 KIPTQAPGT--VNPV 417
           K PT       +NP+
Sbjct: 121 KEPTHKMTVMMINPI 135


>SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +1

Query: 214 DLEEINSIFKIPNQ-APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP----DDINSVF 378
           D+E  ++++   N  +P+   K  + VSA +    +   GN+G  +  P    + I+ +F
Sbjct: 61  DIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQVPLLWANTISEIF 120

Query: 379 KIPTQAPGT--VNPV 417
           K PT       +NP+
Sbjct: 121 KEPTHKMTVMMINPI 135


>SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)
          Length = 219

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
 Frame = +1

Query: 202 ANDIDLEEINSIFKIPNQAPTTTKKPTM--------TVSAPSAVPTV--NTNGNRGRYDT 351
           A D  L++++SI K P+ +P   +KP M        T+ AP  +P    + + + GR   
Sbjct: 124 ARDPSLKQLDSILK-PSDSPP--RKPGMLKHRESAPTLHAPRTIPRDLRSMSHDSGRVPR 180

Query: 352 DPDDINSVFKIPTQAPGTVNPV 417
           DP+       IP  +PGT++PV
Sbjct: 181 DPE------LIPLSSPGTLSPV 196


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/88 (25%), Positives = 25/88 (28%)
 Frame = +1

Query: 256 APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVXXXXXX 435
           A TT  KPT T    +  PT  T        T P          T  P T  P       
Sbjct: 71  ATTTPTKPTTTTPPATTTPTTPTT------TTPPATTTPTKPTTTTPPATTTPTKPTTTT 124

Query: 436 XXXXXXESAPSAIVPTVNTNDTPCITKT 519
                  + P+   P   T  T   T T
Sbjct: 125 PPGTTTPTKPTTTTPPATTTPTKPTTTT 152


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 25.4 bits (53), Expect(2) = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 250 NQAPTTTKKPTMTVSAPSAV--PTVNT 324
           N AP TT  PT T +AP+    PT NT
Sbjct: 9   NTAPATTTAPT-TATAPTTTTAPTTNT 34



 Score = 21.8 bits (44), Expect(2) = 4.1
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = +1

Query: 388 TQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEGVCVKDYFCNNNE 567
           T AP T N               +  +A  PT  T  T   T          DY  NN+ 
Sbjct: 27  TTAP-TTNTALTTTTAPTTTTAPTTTTA--PTTTTAPTTTTTPNNDYNTS-DDYSTNNDY 82

Query: 568 MTNKD 582
            TN D
Sbjct: 83  STNND 87


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 457 SAPSAIVPTVNTNDTPCITKTG 522
           SAP+++ PTV+ N+  C++K G
Sbjct: 409 SAPTSLTPTVDQNNNCCLSKKG 430


>SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)
          Length = 159

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 205 NDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 324
           ++ID  E N I  + N    +TK PTM     SA P++NT
Sbjct: 108 SEIDASEGNKIIGLDNSILASTKPPTMK-RVRSAGPSLNT 146


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 187 HAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP-TVNTNGN 333
           H +++A    +E INSI +   + PTTT++   +V      P  +N NG+
Sbjct: 588 HLESHAGHYPIETINSIRQRHGRPPTTTEELLNSVPQGDTDPNALNRNGD 637


>SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)
          Length = 438

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
 Frame = +1

Query: 208 DIDLEEINSIFKIPNQAPTTTKKPT-MTVSAPSAVPTVNTNGNRGRY------DTDP--- 357
           D+D+  +N +FK  N+A  T  +P+ +T    S   T   +   GR       D  P   
Sbjct: 256 DLDVAFVNPMFK--NRAKITETEPSPITPEDESMASTGEISSEEGRVNPLFEPDRSPNGS 313

Query: 358 -DDINSVFKIPTQAPGTVNPV 417
            DD+ ++  IP+   G VNP+
Sbjct: 314 EDDLPTIPNIPSTDEGQVNPL 334


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 202  ANDI----DLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 312
            AND+    +L ++     +P Q P   K+P +TVS PS  P
Sbjct: 1204 ANDLQSSTELAQVPMQTTVPKQIPEEFKEPEITVSEPSLEP 1244


>SB_6912| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 440

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 202 ANDI----DLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 312
           AND+    +L ++     +P Q P   K+P +TVS PS  P
Sbjct: 354 ANDLQSSTELAQVPMQTTVPKQIPEEFKEPEITVSEPSLEP 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,527,894
Number of Sequences: 59808
Number of extensions: 445577
Number of successful extensions: 1389
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)