Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A10
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    30   1.2  
At1g69310.2 68414.m07949 WRKY family transcription factor contai...    30   1.2  
At1g69310.1 68414.m07948 WRKY family transcription factor contai...    30   1.2  
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    30   1.6  
At5g15060.1 68418.m01765 hypothetical protein                          28   5.0  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   8.7  

>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 142 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKIPNQAPT-TTKKPTMTVSAPSAVP 312
           + + +L +L L  +    A+A     ++  S    P +APT TTK P+    AP+A P
Sbjct: 3   RQFVVLVLLTLTIATAFAADAPSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAP 60


>At1g69310.2 68414.m07949 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 287

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +1

Query: 352 DPDDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEG 531
           DP    S   +P   P   NP              +APS  +P   T DTP ++   +EG
Sbjct: 218 DPHSFTSHHHLPPPLP---NPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAVSTPSEEG 274

Query: 532 V 534
           +
Sbjct: 275 L 275


>At1g69310.1 68414.m07948 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 287

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +1

Query: 352 DPDDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEG 531
           DP    S   +P   P   NP              +APS  +P   T DTP ++   +EG
Sbjct: 218 DPHSFTSHHHLPPPLP---NPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAVSTPSEEG 274

Query: 532 V 534
           +
Sbjct: 275 L 275


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 307 VPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVN---PVXXXXXXXXXXXXESAPSAIV 477
           V  V  NG+ G  D D DDI  VFK  +    T N   P+            +S+P    
Sbjct: 7   VKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSPPMRS 66

Query: 478 PTVNTN 495
           P  + N
Sbjct: 67  PLTSPN 72


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 166 LVLVGS--AHAQANANDIDLEEI 228
           L+LVGS  +HA AN ND++LE +
Sbjct: 170 LILVGSNLSHANANENDVNLEAL 192


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 169 VLVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYD 348
           V  G + A +   D D  EI  + K  N+   +T+KP +     +    V T+GN  R D
Sbjct: 373 VAQGGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSD 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,715
Number of Sequences: 28952
Number of extensions: 301931
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)