Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A07
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    33   0.026
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    29   0.55 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    29   0.73 
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 304 VTSKNVHRKNWKREWNDFIMEDTFLTKLYKHRKLVLPLLKKKHSDLFSKKQ 152
           + S + + +   R ++DF    ++L K Y  R++ L  LKK HS  F+ KQ
Sbjct: 307 IISDSSNTREVLRRYSDFFWLHSYLMKKYPFRRVPLIPLKKFHSKCFNSKQ 357


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 304 VTSKNVHRKNWKREWNDFIMEDTFL 230
           VT+  +H K WK  W++++ +D  L
Sbjct: 33  VTTYLIHYKGWKNSWDEWVEQDRIL 57


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 289 VHRKNWKREWNDFIMEDTFLTKLYKHRKLVLPLLKKKHSDLFSKKQVSISILNTKLTT*P 110
           V R+  + E  DFI E + LTK     K    ++  K+ DL S+ + S S+ N+      
Sbjct: 691 VLREGHESEIKDFIEEHSKLTKQLDDIKNQFGIISSKNRDLLSELEKSKSLNNSLAALES 750

Query: 109 KRK 101
           K K
Sbjct: 751 KNK 753


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 499 KIKKLPDFLITFIRRIFLKYLRMTS-PLQHAVICCYY 606
           KIK+ PD+LI F  R +  Y  + S  L++  +  YY
Sbjct: 450 KIKEWPDYLIFFEERFYSLYSYLDSRGLKYEEVQRYY 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,490
Number of Sequences: 5004
Number of extensions: 43989
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)