Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A07
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   28   7.1  
SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)                    28   7.1  
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)               28   7.1  

>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 358 NH*NIF*ISAYINLNISTVTSKNVHRKNWKREWNDFIMEDTFLTKL 221
           NH +IF  S  + +N+    + N+ RK +   W D  +E+   T++
Sbjct: 543 NHLDIFYFSTMVPVNVLVSNAGNMDRKVFLATWKDIPVENERQTQI 588


>SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)
          Length = 996

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 283 RKNWKREWNDFIMEDTFLT 227
           R+NWKR W  F+++D  LT
Sbjct: 411 RRNWKRRW--FVLKDNILT 427


>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
          Length = 911

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 332 RDL-KNISMIQLLLKTLAHISPLLGVVKYLT*VSLNKFSNRLG*LLKLFLCEQKLS 496
           RDL +   ++Q++LK L++   L   +KYL   SLN  +  LG L +    EQ+ S
Sbjct: 51  RDLSRGKQLVQVILKLLSYCVKLKVNLKYLCNPSLNALNVLLGTLNQALQMEQESS 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,816
Number of Sequences: 59808
Number of extensions: 264006
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)