Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A06
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0416 - 24031024-24032367 29 1.0
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 28 1.4
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 27 3.2
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 27 3.2
12_02_1026 - 25478462-25479232,25479249-25479821 27 4.2
04_04_0901 - 29247518-29247634,29248990-29250273 27 4.2
02_01_0575 - 4264136-4264200,4264589-4264652,4264760-4264879,426... 27 4.2
07_01_0105 - 798883-798942,799118-799186,799282-799345,799434-79... 26 5.6
03_06_0052 - 31295839-31295883,31296312-31296380,31296458-312965... 26 5.6
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558... 26 5.6
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 26 5.6
04_04_1207 + 31734940-31735500,31736565-31736683,31736791-317373... 26 7.4
09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665... 25 9.7
08_01_0876 - 8598664-8599374 25 9.7
05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673 25 9.7
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781... 25 9.7
01_06_1661 - 38972368-38972391,38972822-38973490 25 9.7
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 25 9.7
>03_05_0416 - 24031024-24032367
Length = 447
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFVG 127
L Y HARG H DV P ++L+ H V+ G
Sbjct: 135 LIYCHARGVSHRDVKPQNVLLDAHGNLKVSDFG 167
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLEHHRKK 109
L Y H+RG H DV P I+++H +++
Sbjct: 232 LDYCHSRGIMHRDVKPHNIMIDHEKRQ 258
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 35 YLHARGGGHVDVSPVCIVL 91
+LHA+GG HV V+ +CIVL
Sbjct: 276 HLHAQGG-HVFVASICIVL 293
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFVGTT 133
+ YLHARG H D+ P ++L+ + V +GT+
Sbjct: 157 MEYLHARGVVHRDLKPENLMLDGGGRVKVADLGTS 191
>12_02_1026 - 25478462-25479232,25479249-25479821
Length = 447
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLE 94
L Y HARG H DV P ++L+
Sbjct: 137 LSYCHARGVAHRDVKPQNVLLD 158
>04_04_0901 - 29247518-29247634,29248990-29250273
Length = 466
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 155 SSAVHLVATRETRRAVGNVGQKRLALLLAAL 247
++A HL A + + G+V Q+ +A+++AAL
Sbjct: 279 TAATHLTALKRAANSRGDVEQRLVAMMVAAL 309
>02_01_0575 -
4264136-4264200,4264589-4264652,4264760-4264879,
4264906-4265002,4265365-4265437,4265534-4265630,
4265736-4266007,4266114-4266240,4266902-4267139,
4267508-4267620,4267722-4267762,4268569-4268788
Length = 508
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 286 VKDRIVGLKVCNKQGGQ*KSQSFLADITDCPARFPGSYK 170
V+ ++ L + N+Q G KS S +A + ++P +++
Sbjct: 225 VRPKLNDLNISNRQDGILKSHSDIASFEEATTKYPNAFR 263
>07_01_0105 -
798883-798942,799118-799186,799282-799345,799434-799516,
799957-800022,800143-800233,800622-800779,801144-801338,
801499-801628,803016-803168,803877-803962
Length = 384
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLEHHRKK 109
L Y H++G H DV P ++++H +K
Sbjct: 190 LDYCHSQGIMHRDVKPHNVMIDHELRK 216
>03_06_0052 -
31295839-31295883,31296312-31296380,31296458-31296521,
31296598-31296680,31297243-31297308,31297426-31297516,
31298090-31298247,31298432-31298476,31299189-31299318,
31300685-31300935
Length = 333
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLEHHRKK 109
L Y H++G H DV P ++++H +K
Sbjct: 144 LDYCHSQGIMHRDVKPHNVMIDHELRK 170
>03_02_0094 -
5583932-5584036,5584137-5584200,5584305-5584387,
5584523-5584588,5584711-5584801,5585259-5585392,
5586219-5586413,5586886-5587015,5587873-5587958
Length = 317
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 29 LHYLHARGGGHVDVSPVCIVLEHHRKK 109
L Y H++G H DV P ++++H +K
Sbjct: 139 LDYCHSQGIMHRDVKPHNVMIDHELRK 165
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 112 AFLSMMFENYANWAYVHVTSAASV*IMQLRGGGD 11
AF + N+A A ++VT+ +M++RGG D
Sbjct: 465 AFSRFAYPNFAFPATINVTAEFPANLMRMRGGSD 498
>04_04_1207 +
31734940-31735500,31736565-31736683,31736791-31737318,
31738256-31738354,31739768-31739909
Length = 482
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 180 VATR*TALDSLITKLPVVPTK 118
V R + D+++TK+P VPTK
Sbjct: 383 VVVRGKSYDAVVTKMPFVPTK 403
>09_03_0035 -
11765108-11765376,11765909-11766005,11766505-11766579,
11767367-11767650,11768466-11768562
Length = 273
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 128 TTGSFVIKLSSAVHLVATRETR 193
T GSFV K S ++HLV + E R
Sbjct: 193 TQGSFVAKQSISLHLVQSPEKR 214
>08_01_0876 - 8598664-8599374
Length = 236
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 92 RELCKLGLRPRDLRRERVD 36
R C+L LR R ++RERV+
Sbjct: 193 RRRCRLRLRHRSMKRERVE 211
>05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673
Length = 337
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 101 DDVRELCKLGLRPRDLRRERVDN 33
DD+R CK G RP D E +D+
Sbjct: 128 DDLRR-CKKGRRPEDEEEEEIDD 149
>04_04_0848 -
28677545-28677635,28677760-28677887,28678020-28678126,
28678242-28678320,28678426-28678515,28678603-28678854,
28680351-28680497,28680711-28681035,28681177-28681406
Length = 482
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 289 LVKDRIVGLKVCNKQGGQ*KSQSFLADITDCPARFPGS 176
LV +++GL V N + + Q F + P FPG+
Sbjct: 190 LVAKKLIGLDVTNSRELRKNFQDFFQGMVSFPIYFPGT 227
>01_06_1661 - 38972368-38972391,38972822-38973490
Length = 230
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 82 ANWAYVHVTSAASV*IMQLRGGG 14
+ W VHV +AA V + RGGG
Sbjct: 130 SEWTVVHVPAAAGVVRVASRGGG 152
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 79 LHSSRTSSKER--RQFCWYHWKF 141
L+SS+ S+++ R CW HW++
Sbjct: 171 LYSSKNKSEKQTERYDCWSHWRY 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,414,929
Number of Sequences: 37544
Number of extensions: 180826
Number of successful extensions: 414
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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