Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A06
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)                 31   0.27 
SB_11275| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.0005)            27   2.5  
SB_43868| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_17886| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.6  
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              26   7.6  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                26   7.6  

>SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)
          Length = 779

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 240 PPCLLQTFKPTIRSFTRHWFGLM 308
           P CLLQ  +P ++S +R+W G +
Sbjct: 484 PGCLLQLVEPELKSLSRYWLGAL 506


>SB_11275| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.0005)
          Length = 256

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 2   YSGVAPAP*LHYLHARGGGHVDVSPVCIVLE 94
           ++GVA A  LH++H RG  H D+    +VLE
Sbjct: 184 FAGVADA--LHFIHGRGFVHNDLKGNNVVLE 212


>SB_43868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 265 LKVCNKQGGQ*KSQSFLADITDCPARFPGSYK 170
           +K    +GG     SF  D+T+ PA+   SY+
Sbjct: 11  IKASRHEGGSASIHSFYVDVTNAPAQQHQSYR 42


>SB_17886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 265 LKVCNKQGGQ*KSQSFLADITDCPARFPGSYK 170
           +K    +GG     SF  D+T+ PA+   SY+
Sbjct: 11  IKASRHEGGSASIHSFYVDVTNAPAQQHQSYR 42


>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 231 FYWPPCLLQTFKPTIRSFTRH 293
           F WP   +  FKP +++F +H
Sbjct: 137 FKWPDAEVPAFKPALQTFYKH 157


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 195 GQSVMSAKNDWLFYWPPCLLQ 257
           G+  +S K++W+FY+  C+ Q
Sbjct: 168 GRGYISGKHEWVFYFDNCMGQ 188


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 133  WKFRDQAIKCRSPCSYQGNAPGSR*CRPKTTGSSIGRLVYYR 258
            W   + AI C    + + + PG+  C P+  G SI +L  +R
Sbjct: 1371 WIMSEPAISCGETTADERSVPGTPACVPR--GKSISKLRLFR 1410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,260
Number of Sequences: 59808
Number of extensions: 200901
Number of successful extensions: 362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)