Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A06
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   1.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   8.3  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 KRAGQSVMSAKNDWLFYWPPCLL 254
           K AG  V+   + + FYW  C+L
Sbjct: 74  KAAGHWVIHPCSSFRFYWDLCML 96


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 KRAGQSVMSAKNDWLFYWPPCLL 254
           K AG  V+   + + FYW  C+L
Sbjct: 74  KAAGHWVIHPCSSFRFYWDLCML 96


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 KRAGQSVMSAKNDWLFYWPPCLL 254
           K AG  V+   + + FYW  C+L
Sbjct: 74  KAAGHWVIHPCSSFRFYWDLCML 96


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 234 YWPPCLLQTFKPT 272
           YW PC+L+  +P+
Sbjct: 338 YWLPCILRMSRPS 350


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 107 KGVNFVGTTGSFVIKLSSAVHLV 175
           K V F GTT   ++   S  H V
Sbjct: 38  KPVPFFGTTKDLILVKKSTAHFV 60


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 94  TSSKERRQFCWYHW 135
           T S+ERR F ++ W
Sbjct: 499 TESEERRFFSFHQW 512


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 302 WLPCLLRMSRP 312


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 302 WLPCLLRMSRP 312


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 302 WLPCLLRMSRP 312


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 302 WLPCLLRMSRP 312


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 302 WLPCLLRMSRP 312


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 302 WLPCLLRMSRP 312


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 370 WLPCLLRMSRP 380


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 237 WPPCLLQTFKP 269
           W PCLL+  +P
Sbjct: 370 WLPCLLRMSRP 380


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +1

Query: 124 WYHWKF 141
           W HWKF
Sbjct: 862 WRHWKF 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,643
Number of Sequences: 438
Number of extensions: 1806
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)