Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A05
         (471 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    31   0.004
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    27   0.087
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    27   0.087
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    27   0.087
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.27 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.62 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   1.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   1.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.6  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 31.5 bits (68), Expect = 0.004
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 96  TALRDPAFYQLYHRIVGYINAFKHYLKPYPQEKLHFVGVHTS 221
           TA+RDP FY+ +  I      +K  L  Y + +L++ G+  S
Sbjct: 392 TAMRDPIFYRWHSYIDDIFQEYKATLPRYTENQLNYPGITVS 433



 Score = 28.7 bits (61), Expect = 0.029
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 338 VRQPRLNHKPFS--VTIDVXSDIATDAVIKIFLGPKYNDXGFP 460
           VR   L H+PF+  +T++  S+       +IFL PK ++ G P
Sbjct: 472 VRFTHLQHQPFTYKITVNNQSNGNRKGTCRIFLAPKTDERGNP 514


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 0.087
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 112 LHSISYITGLWVTLTHSSIT 171
           +H+ SY+TG+WV L + S T
Sbjct: 123 IHTSSYMTGIWVWLINISAT 142



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +1

Query: 19  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTL 153
           +AMC + + +  +   S P  L F  P    L         W+ L
Sbjct: 178 IAMCGMYYRDECSFAESIPPYLFFVPPPLMFLQDFLSHQHAWIWL 222


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 0.087
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 112 LHSISYITGLWVTLTHSSIT 171
           +H+ SY+TG+WV L + S T
Sbjct: 356 IHTSSYMTGIWVWLINISAT 375



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +1

Query: 19  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTL 153
           +AMC + + +  +   S P  L F  P    L         W+ L
Sbjct: 411 IAMCGMYYRDECSFAESIPPYLFFVPPPLMFLQDFLSHQHAWIWL 455


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 0.087
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 112 LHSISYITGLWVTLTHSSIT 171
           +H+ SY+TG+WV L + S T
Sbjct: 356 IHTSSYMTGIWVWLINISAT 375



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +1

Query: 19  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTL 153
           +AMC + + +  +   S P  L F  P    L         W+ L
Sbjct: 411 IAMCGMYYRDECSFAESIPPYLFFVPPPLMFLQDFLSHQHAWIWL 455


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 102 LRDPAFYQLYHRIVGYINAFKHYLKPYPQEKLHFVGV 212
           LRDP F++ +  I      FK  L  Y   +L++ GV
Sbjct: 394 LRDPLFFRWHAYIDDMFQEFKATLPRYTVAQLNYPGV 430


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.62
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 314 TSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKI 424
           T Y H+ K+   R  H P +V +D   +   D +I +
Sbjct: 296 TKYCHSLKIHLRRYGHTP-NVVLDEEGNPCPDIIIDV 331


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 281 NSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSD 397
           N ++ + KE        F + QP LNH   SVT  V  D
Sbjct: 43  NEMYHSVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHD 81


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 335 KVRQPRLNHKPFSVTI 382
           K   P LNHKP ++TI
Sbjct: 255 KQELPDLNHKPLNLTI 270


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 335 KVRQPRLNHKPFSVTI 382
           K   P LNHKP ++TI
Sbjct: 147 KQELPDLNHKPLNLTI 162


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 281 NSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSD 397
           N ++   KE        F + QP LNH   SVT  V  D
Sbjct: 43  NEMYHRVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHD 81


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 281 NSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSD 397
           N ++   KE        F + QP LNH   SVT  V  D
Sbjct: 43  NEMYHRVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHD 81


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 116 CRVSKCGLVKVKRTGHE-GVLVEWFR 42
           CR+ KC LV + ++G   G    WF+
Sbjct: 61  CRLRKCLLVGMSKSGSRYGRRSNWFK 86


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 305  LFWSRIHC*W 276
            LFW++ HC W
Sbjct: 2269 LFWNKDHCDW 2278


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 AFKHYLKPYPQEKLHFVGV 212
           AF H+L  +  E LH VG+
Sbjct: 163 AFSHFLIVFFTETLHTVGI 181


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 AFKHYLKPYPQEKLHFVGV 212
           AF H+L  +  E LH VG+
Sbjct: 163 AFSHFLIVFFTETLHTVGI 181


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 AFKHYLKPYPQEKLHFVGV 212
           AF H+L  +  E LH VG+
Sbjct: 163 AFSHFLIVFFTETLHTVGI 181


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 AFKHYLKPYPQEKLHFVGV 212
           AF H+L  +  E LH VG+
Sbjct: 163 AFSHFLIVFFTETLHTVGI 181


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 PTQLQGSSTTTQPQA 366
           PT LQ  +T T P A
Sbjct: 83  PTHLQSPNTQTHPSA 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,626
Number of Sequences: 336
Number of extensions: 2176
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)