Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A05
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          30   0.84 
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   2.6  
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   5.9  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)               27   7.8  

>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 19   LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 111
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 7   MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 174
           + L+ +  +   L H T T S    LT T     H    H +++++T  + TLTHS++T 
Sbjct: 40  LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99

Query: 175 SLILKRNFISSASTH 219
           S +       S  TH
Sbjct: 100 STLTHSTLTHSTLTH 114



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 4   LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 177
           L  L+L   ++ HL   +ST T S    LT T  H     +++Y T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105

Query: 178 LILKRNFISSASTHQ*CCR*EISH 249
            +       S  TH       ++H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 424 DLDNGISGNIGLNVDGN 374
           ++D G+SGN  LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413


>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -3

Query: 424 DLDNGISGNIGLNVDGNT--ERLVVES 350
           ++D G+ GN  LN+DG+   E+L+VE+
Sbjct: 340 NIDVGVGGNFTLNMDGSALIEKLLVET 366


>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 576

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 89  LPNRTSRPCILSAISQDCGLH*RIQALPEALSSRETSFRRRPHINDVVVEKLVTFFDYSQ 268
           L N T    + S +S DC +   + +  +A+S      R+R   + VV+E ++ F ++S+
Sbjct: 511 LVNVTHFKYLGSILSSDCSMRAELTSRIQAVSCAYGRLRKRVFDSLVVIEGILNFTEHSE 570


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 466 CDGESXIVVLRSQEDLDNGISGNIG-LNVDGNTERLVVESW 347
           C  ES  ++LR+ ED+ +   GN+G LN+   T+  V  SW
Sbjct: 815 CGAESNELILRTFEDVPSVAPGNVGTLNLTSMTDLRV--SW 853


>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
          Length = 306

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
 Frame = +3

Query: 30  LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYHRIVGYINAF-------KHYLKPYPQ 188
           +G   +   +  F+P+ L F  T+  D  FY   +R +G IN++       +H  K + +
Sbjct: 1   MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSYSIGLQFSEHSSKAFGE 60

Query: 189 -EKLHFVGVHTSMML 230
             + HF  VH S+ML
Sbjct: 61  IWQQHF--VHRSLML 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,451
Number of Sequences: 59808
Number of extensions: 271583
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)