Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A05
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   2.9  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   2.9  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    28   3.9  
U58761-2|AAB00713.1|  308|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   9.0  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.0  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.0  

>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 171
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 171
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 59 protein.
          Length = 1592

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 349 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKE 251
           W+TNL   +    NL+F  +Y + G  L ++ +
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSK 174


>U58761-2|AAB00713.1|  308|Caenorhabditis elegans Hypothetical
           protein C01F1.5 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 45  KPFDKHTFMPSALDFYQTALRDPAFYQLYHR 137
           KP  K  F PS  DF +  LRD AF Q+  R
Sbjct: 56  KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 1   DLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 135
           +L K++       H + STS+   P  +TF+ P FE   + S +T
Sbjct: 333 ELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 6154 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6190


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 6174 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6210


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 334  EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 224
            E++    + LFF Q    SG++L ++ EC  ++  +I
Sbjct: 6174 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,674
Number of Sequences: 27780
Number of extensions: 203000
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)