Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A05
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    29   1.2  
At5g15510.1 68418.m01816 expressed protein                             27   8.5  
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co...    27   8.5  
At5g09280.1 68418.m01075 pectate lyase family protein similar to...    27   8.5  
At4g22980.1 68417.m03316 expressed protein ; expression supporte...    27   8.5  

>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 141 QSCDIADRMQGLEVRFGKSQAHW 73
           Q CD+ D++Q L  R  KS  HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 36  AAPKPFDKHTFMPSALDFYQTALRDPAFYQLYHR 137
           A P P+    F+P     + TA RDP F+   H+
Sbjct: 439 AQPMPYFDRPFIPRRSSKHPTAPRDPKFHIPQHK 472


>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
           contains Pfam profile PF01011: PQQ enzyme repeat
          Length = 978

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 195 LHFVGVHTSMMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHT 329
           L FV V+T   +S  +  HS  +  +MPL +    ++RL L+  T
Sbjct: 559 LSFVDVYTGKEISSSDIGHS--VVQVMPLPITDSKEQRLHLIADT 601


>At5g09280.1 68418.m01075 pectate lyase family protein similar to
           major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus
           arizonica]
          Length = 297

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -1

Query: 456 NPXSLYLGPKKILITASVAISDXTSMVTLKGLWLSRG*RTLKLCG*LVLISFLVKNTLLV 277
           +P S  +GP   +I       D   +VT K +W+     TL  C   +L   L    + V
Sbjct: 100 HPPSSVMGPDSKIIQLGHMDGDAIRLVTAKKVWIDH--NTLYDCEDGLLDVTLGSTDVTV 157

Query: 276 ASNW 265
           ++NW
Sbjct: 158 SNNW 161


>At4g22980.1 68417.m03316 expressed protein ; expression supported
           by MPSS
          Length = 559

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +2

Query: 182 SSRETSFRRRPHINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNH 361
           +++ TS    P +     + +  F DY Q +  + +  T+ +  +S  H F  +QP  ++
Sbjct: 49  NTKFTSQESLPRLRTSFYDLITAFPDYLQTNQADHLRSTEYQNLSSSSHVFGQQQPLFSY 108

Query: 362 KPFSVTIDVXSDI 400
             F    +  SD+
Sbjct: 109 SQFREISESESDL 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,842,395
Number of Sequences: 28952
Number of extensions: 185127
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)