Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A04
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 31 0.11
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.45
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 28 0.79
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 1.4
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 1.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 1.8
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.4
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 27 2.4
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 3.2
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 4.2
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 26 4.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.6
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 7.3
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 7.3
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 7.3
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 7.3
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 7.3
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.7
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 260 GARPPAWPTDSISTPEVLSYVEQLEK-EKCSHTTLKSKEWSAHEPGPDLESSCSKESPVE 436
G P TD + P+ ++ Q EK KC + +++EW + + + PV
Sbjct: 22 GYNPVIRLTDRTTQPDPSQHIYQEEKISKCEGLSYRAREWLLLSSNSNARVAIALAEPVL 81
Query: 437 YEPITPKSESHAE 475
Y P SE +E
Sbjct: 82 YLPGATSSEIQSE 94
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.45
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 311 LSYVEQLEKEKCSHTTLKSKEWS--AHEPGPDLESSCSKESPVEYEPITPKSESHAESEN 484
L YVE + +K T + K+ +H+ G S +E E + + H E+E
Sbjct: 696 LDYVELMTGKKVYSRTERKKDTQKQSHDHGHSHSKSHDREKEKEKKK-DREHRKHRETEE 754
Query: 485 DDVKPHPSKRRP 520
+D P P RP
Sbjct: 755 EDEGPPPQPARP 766
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.3 bits (60), Expect = 0.79
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 287 DSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGP-DLESSCSKESPVEYEPITPKSE 463
+S S+ E S E+ E E+ K K +A E D ESS +E E E
Sbjct: 46 ESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDE 105
Query: 464 SHAESENDDVKPHPSK 511
S +ESE++ S+
Sbjct: 106 SESESESESESEEESE 121
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 1.4
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 3/143 (2%)
Frame = +2
Query: 80 LPFIDQDDSFDTKFVSVTPREVES--NDIIISEYI-VHNDQTSKGDLQELGVERRSSGLS 250
+P +D+ + + VT +VE+ + I I + I + N+Q + Q + V++ +
Sbjct: 278 VPKVDEVEEVHSPEAKVTENDVENVQSGIDIEKTIQLLNNQEIPSEQQIISVDKATESPV 337
Query: 251 VDVGARPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESP 430
+V P D I P L +L EK E E + + S
Sbjct: 338 QEVAVDVNEKPVDEIVEPSKLQMENKLPSEKSPTIDRTGVEAPLFELSVSMPLTLIPPSK 397
Query: 431 VEYEPITPKSESHAESENDDVKP 499
EP+ P+ S A ++ P
Sbjct: 398 FS-EPVKPELSSEAWLLRTEMSP 419
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 404 ESSCSKESPVEYEPITPKSESHAESENDDVKPH 502
+SS SK+S ++ ++PK+ + + E +D+K H
Sbjct: 580 KSSISKKSSNSFKELSPKTNNDEDDEFNDLKFH 612
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 389 PGPDLESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKRRP 520
PG S+ P EY P S+ A++EN D K H + P
Sbjct: 11 PGRHHWSNSKDGMPPEYTNQDPNSDQ-ADNENSDAKAHQPQHSP 53
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 RPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEP 445
R P P + + E L L E L + +EP P E++C KESP+ E
Sbjct: 105 REPPLPNEPVPE-EPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP--ETNCHKESPLSDET 161
Query: 446 ITPKSESH-AESENDDVKPHPS 508
++ S++ + S ++ + PS
Sbjct: 162 VSETSKNDTSNSPTNENQAQPS 183
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 2.4
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -2
Query: 435 STGDSLEQELSKSGPGS*A----DHSFDFK-VVCEH-FSFSNCST*LSTSGVLIESVGQA 274
S+GDS +QEL +S P + + D SF +K C+ + +STS S+ Q
Sbjct: 356 SSGDSTDQELPQSIPATESETSDDSSFSYKRSPCKRKLVEATAQPAISTSVAEGASLAQV 415
Query: 273 GGRAPTSTDKPELRLSTP 220
P K +R S+P
Sbjct: 416 SKPLPERLQKDSMRRSSP 433
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 257 VGARPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPD 400
V +PP DS E L V ++ K + +T+ SK+ S+H P+
Sbjct: 616 VSPKPPTEGVDSEVNGESLVQVNKVLKSEDDNTSEASKDPSSHVKSPE 663
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 3.2
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 323 EQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESENDDV-KP 499
E E+E+ T + KE S+ E D ESS S + SES + SE++ K
Sbjct: 183 ESEEEEEVVEKTEEKKEGSS-ESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKA 241
Query: 500 HP-SKRRP 520
P S+ RP
Sbjct: 242 EPASEERP 249
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 404 ESSCSKESPVEYEPITPKSESHAESENDDVKPHP 505
ESS SK+ P+ +S SEN KP P
Sbjct: 283 ESSISKDHETSQAPLGSESVDTQASENVTTKPEP 316
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = +2
Query: 398 DLESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKRRP 520
DL + P+E +P+ ES KP P + P
Sbjct: 145 DLSTPQDSSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEP 185
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/89 (22%), Positives = 27/89 (30%)
Frame = +2
Query: 281 PTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKS 460
P+ S S+ S S ++ S S+ SS S S PIT +
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 461 ESHAESENDDVKPHPSKRRPXXXXXXXET 547
S S + S RP T
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITT 243
>SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 7.3
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Frame = +2
Query: 116 KFVSVTPREVESNDIIISEYIVHNDQTSKG-DLQELGVERRSSG-LSVDVGARPPAWPTD 289
+F S E+ +++ Y ND+ KG ++ V+R G + D +
Sbjct: 678 QFTSKKQEEIPVDELFF--YRFFNDKYIKGKQARKTKVDRDEEGEIDEDEVWKALVDSKP 735
Query: 290 SISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKSESH 469
+ E S + E +K E SA E D ES S+E P+ + +H
Sbjct: 736 QLEMDEEESDFDSEEMDKAMTDMGSDSEQSADEN--DNESMASEEKPMFSDEENLSEIAH 793
Query: 470 AESENDD 490
+E E DD
Sbjct: 794 SEDEFDD 800
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 505 WMRFDIIIFRLCMRFAF 455
W F III LC RFA+
Sbjct: 83 WKAFIIIIVELCERFAY 99
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +2
Query: 338 EKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESE 481
+K SH S EW HE SS SK+ E T + SH ESE
Sbjct: 126 DKKSHLIKWSIEWCLHE------SSTSKDLTDEASENTIITHSHPESE 167
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 312 STSGVLIESVGQAGGRAPTSTDKPELRLSTPNS 214
+ S + I+ + A PTST+ ++TP+S
Sbjct: 256 ANSPLTIQRISSAAPSTPTSTENVNYNMTTPSS 288
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 8 LATKPIEVTNTHNTNYNKMYTHNTLPFIDQDDSFDTKFV---SVTPREVESNDIIISEYI 178
L +K + + +NT ++K+ H + DDS D KF S TP + +D E +
Sbjct: 572 LVSKKYQDNSVNNTYFDKVMQHVLVHSPAFDDSSDPKFETNRSETPTQYTLDDSANDELM 631
Query: 179 V 181
+
Sbjct: 632 I 632
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 7.3
Identities = 22/99 (22%), Positives = 38/99 (38%)
Frame = +2
Query: 224 VERRSSGLSVDVGARPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDL 403
+ RRS G + PPA +S T L + E ++ + +SK+ +E +
Sbjct: 175 IPRRSRGRTSSKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESKD--ENEENKET 232
Query: 404 ESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKRRP 520
++ E+ E E A+ E VK + P
Sbjct: 233 STTNVAETDAPEEETVDTVEEIADEEKHSVKEESGEASP 271
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 53 YNKMYTHNTLPFIDQDDSFDTKFVSVTPREVESNDI 160
YN TL F+D+ +S D + R SN I
Sbjct: 663 YNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSI 698
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 414 VPKSHQLNMSPSLPKANLMQSLKMMMSNLIQAK 512
V +S+Q N+S SLP + + + + L QAK
Sbjct: 173 VDQSYQNNLSHSLPVPMISREINLKKGKLDQAK 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,450
Number of Sequences: 5004
Number of extensions: 41198
Number of successful extensions: 177
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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