Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A04
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.22
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 31 0.51
At2g14010.1 68415.m01557 hypothetical protein and genefinder 31 0.67
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 30 0.89
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 30 0.89
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 30 0.89
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 30 1.2
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 30 1.2
At2g26180.1 68415.m03144 calmodulin-binding family protein low s... 29 2.0
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 28 3.6
At1g55730.1 68414.m06381 cation exchanger, putative (CAX5) simil... 28 3.6
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof... 28 4.7
At5g47340.1 68418.m05835 palmitoyl protein thioesterase family p... 27 6.2
At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico... 27 6.2
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico... 27 6.2
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 27 6.2
At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related... 27 6.2
At3g42910.1 68416.m04500 expressed protein ; expression supporte... 27 6.2
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 320 VEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESEND---D 490
++ ++KEK T K E S+ + E +KE+P + K ES +E E+D D
Sbjct: 46 IDVVQKEKAEKTVPKKVESSSSDASDSDEEEKTKETPSKL-----KDESSSEEEDDSSSD 100
Query: 491 VKPHPSKRRP 520
+ P+K+RP
Sbjct: 101 EEIAPAKKRP 110
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +2
Query: 347 SHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKRRPXX 526
SH+ S S P SS +SP P+TP+S S S + D PS +
Sbjct: 262 SHSPAHSPSHSPATPKSPSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQSAAPSDQSTPL 321
Query: 527 XXXXXET 547
ET
Sbjct: 322 APSPSET 328
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 30.7 bits (66), Expect = 0.67
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Frame = +2
Query: 155 DIIISEYIVHNDQTSKGDLQELGVERRSSGLSVDVGARPPAWPTDSISTPEVLSYVEQLE 334
D ++ EY + + + L + V+ RS ++ V +P + D+I+ + V +
Sbjct: 431 DQVLGEYTLVQRRPT---LPPVEVDTRSGEIAASV-EKPLSPQADTIAQVKGSGIVGDSD 486
Query: 335 K--EKCSHTTLKSKEWSAHEPGPDLESSCSKESP----VEYEP-ITPKSESHA-ESENDD 490
+ + +H + S E S + P L+S + ++ +E EP IT S A E+ ND
Sbjct: 487 EVPQDGNHDSPSSNETSIPDEAPQLQSPLNPDTEDTAYIESEPNITEPSMFEADENSNDK 546
Query: 491 VKPHP 505
+PHP
Sbjct: 547 TRPHP 551
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 380 AHEPGPDLESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKR 514
A G D E E+PV + + P + E E D+ K SKR
Sbjct: 40 ARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKR 84
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 380 AHEPGPDLESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKR 514
A G D E E+PV + + P + E E D+ K SKR
Sbjct: 40 ARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKR 84
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 30.3 bits (65), Expect = 0.89
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 245 LSVDVGARPP---AWPTDSISTPEVLSYVEQLEKE-KCSHTTLKSKEWSAHEPGPDLESS 412
L D RP WP+ S +V+ L+K+ + + +EW E G L S
Sbjct: 483 LQFDKSCRPGFYGIWPSQS----QVVKPRRPLQKDPELDYEVDSDEEWEEEEAGESL-SD 537
Query: 413 CSKESPVEYEPITPKSESHAESENDDVKP 499
C K+ E K++ +SE+D + P
Sbjct: 538 CEKDEDESLEEGCSKADDEDDSEDDFMVP 566
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 383 HEPGPDLESSCSKESPVEYEPI---TPKSESHAESENDDVKPHPSKRRP 520
HEP P L + K SPV P+ P ES + D P +R P
Sbjct: 470 HEPSPVLATPVDKPSPVPSRPVQKPQPPKESPQPDDPYDQSPVTKRRSP 518
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 92 DQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVERRSS-GLSVDVGAR 268
DQ D + T +++ D I ++VH+DQ+ D +E+G ER++ + V+ G +
Sbjct: 997 DQSDDEEIGHKRKTKHSIQAEDGIEKSFVVHSDQS---DDEEIGHERKTKHAIQVEDGIQ 1053
Query: 269 PPAWPTDSISTPEVLSYVEQL 331
++ T S S V Q+
Sbjct: 1054 -KSFVTCSEKPYNTFSVVSQI 1073
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 92 DQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVERRS 238
DQ D + + T +++ D I Y++H+DQ+ D +E+G +R++
Sbjct: 965 DQSDDEEIEHERKTKHCIQAEDGIEKSYVMHSDQS---DDEEIGHKRKT 1010
>At2g26180.1 68415.m03144 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 416
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +2
Query: 248 SVDVGARPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLK-SKEWSAHEPGPDL-ESSCSK 421
+VD A PP P + +PE V+ + + K + PG + ESS S
Sbjct: 262 TVDTAATPPPLPHKHLKSPETADVVQVRRNNVTTRVSAKPPPHMLSSSPGYEFNESSGSS 321
Query: 422 ESPVEYEPITPKSESHAESENDDVKPH 502
P++ K+ +++ + K H
Sbjct: 322 SICTSTTPVSGKTGLVSDNSSSQAKKH 348
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 392 GPDLESSCSKESPVEYEPITPKSESHAESENDDVKPHPSKRR 517
G D E + KE E++ + K + H + DD K H K++
Sbjct: 62 GSDDEDNDKKEKKKEHD-VQKKDKQHENKDKDDEKKHVDKKK 102
>At1g55730.1 68414.m06381 cation exchanger, putative (CAX5) similar
to low affinity calcium antiporter CAX2 [Arabidopsis
thaliana] gi|1488267|gb|AAB05914; similar to H+/Ca2+
exchanger 2 [Ipomoea nil] gi|4512263|dbj|BAA75232;
Ca2+:Cation Antiporter (CaCA) Family member
PMID:11500563
Length = 441
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 419 KESPVEYEPITPKSESHAESENDDVKPHPSK 511
K P Y P+T ++ + E+ +DD P SK
Sbjct: 255 KSQPSSYTPLTEETNQNEETSDDDEDPEISK 285
>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
profile: PF04283 protein of unknown function (DUF439)
Length = 1197
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 62 MYTHNTLPFIDQDDSFDTKFVSVTPREVESNDIIISEYIVHNDQTSKGDLQELGVERRSS 241
+Y H+T+ D+DD+ + V I++ EY+ +Q +K + L + S
Sbjct: 802 VYAHDTVRG-DEDDAIEMAIEHVRDEPASLRKIVLDEYLRSKNQENKKETYSLIMRELSC 860
Query: 242 G 244
G
Sbjct: 861 G 861
>At5g47340.1 68418.m05835 palmitoyl protein thioesterase family
protein
Length = 317
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 44 NTNYNKMYTHNTLPFIDQDDSFDTKFVSVTPREVESNDIIISEYIV 181
+ N K+YT + + DD+ KFVSV V + + +Y+V
Sbjct: 249 SANQTKLYTEDWIGLKTLDDAGKVKFVSVPGGHVRMAEEDVVKYVV 294
>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 547
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 371 EWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESENDDV 493
+WS P ESSC +E E E + ++ EN DV
Sbjct: 202 DWSKSNPFVKKESSCEREGVGEREAMDDLFSAYMNLENIDV 242
>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 553
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 371 EWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESENDDV 493
+WS P ESSC +E E E + ++ EN DV
Sbjct: 202 DWSKSNPFVKKESSCEREGVGEREAMDDLFSAYMNLENIDV 242
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 269 PPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKES 427
PP TD +S+PE L+ E++EKE+ T + P P + + S+ES
Sbjct: 459 PPNSATDEVSSPEALA-SEEVEKEQVVAETPVDE---VKTPAPVVTEASSEES 507
>At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related
similar to storekeeper protein GI:14268476 [Solanum
tuberosum]
Length = 328
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 365 SKEWSAHEPGPDLESSCSKESPVEYEPITPKSESHAES-ENDDVKPHPSKRR 517
S+E EP D ES ES E EP+T + + + S E + P + R
Sbjct: 84 SEEEEEDEPSSDSESGSESESDTEAEPMTLAAAAPSSSNEKRQSEGKPEEER 135
>At3g42910.1 68416.m04500 expressed protein ; expression supported
by MPSS
Length = 649
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 71 HNTLPFIDQDDSFDTKF 121
+N LP D+DD FDT F
Sbjct: 191 NNPLPIFDEDDDFDTLF 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,943,254
Number of Sequences: 28952
Number of extensions: 209638
Number of successful extensions: 809
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -