Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_A03
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          32   0.34 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)               29   3.1  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    28   5.5  

>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 82  ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 261
           AL +   ALR P   ++Y   +  ++ FK  LK YP    H   +       + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239

Query: 262 YSQ 270
           Y Q
Sbjct: 240 YGQ 242


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +2

Query: 44  HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSALKS 223
           +L HST T S    L  T     T  +++++T  + TLTH +IT S I         L  
Sbjct: 26  NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84

Query: 224 MMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHTT 334
           + L+    +HS    + +  +  +        +TH+T
Sbjct: 85  LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 122 SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 289
           ++++ T + +TLTHS++T   +   N   S L    L+  N +HS LT + L  LT+
Sbjct: 1   TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +2

Query: 11  MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 178
           + L+ +  +   L H T T S    LT T     H    H +++++T  + TLTHS++T 
Sbjct: 40  LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99

Query: 179 SLILKRNFISSALKSMMLSLRN*SHS 256
           S +       S L    ++    +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 181
           L  L+L   ++ HL   +ST T S    LT T  H     +++Y T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105

Query: 182 LILKRNFISSALKSMMLSLRN*SH 253
            +       S +    L+  N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 23   LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 115
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
          Length = 306

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 34  LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAF 165
           +G   +   +  F+P+ L F  T+  D  FY   NR +G IN++
Sbjct: 1   MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 199 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 291
           LH  G K++D VVE +  F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,453
Number of Sequences: 59808
Number of extensions: 282659
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)