Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A02
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 31 0.069
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 30 0.21
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 28 0.64
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 0.84
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 2.6
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 26 3.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 4.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 5.9
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 7.9
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 25 7.9
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 31.5 bits (68), Expect = 0.069
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = -2
Query: 464 DQLSCFRLCLNERRKAVEKKFSVS*LRSGSRTPLTCS*STPISFLTCPQAVVPMKVMDSS 285
D ++ FRL + RR A S G R +T S TP+S P +K+ +
Sbjct: 37 DNVNAFRLLM--RRFAQPVVIITSGFADGHRAGMTASSFTPVSLTPNPVISFNIKIPSRT 94
Query: 284 IGCLTAATSFVILLLSWSMKLSPSAAALV 198
+ + ++ LLS S+K A+L+
Sbjct: 95 ANAIQQSNRVIVHLLSSSIKKHSEWASLL 123
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 29.9 bits (64), Expect = 0.21
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -1
Query: 330 NVPTSRCPDEGDGLVDRLFDRSH-LFRDTSAQLVDEIEPVSGRARHHHRREDLQHVRHVD 154
N PTS P +G G F +H L ++TS+ PV+G++ H+ + QH+++
Sbjct: 139 NSPTSESPSKGFGS----FINNHILHKNTSSH---PSSPVNGKSSDIHKSQSYQHLKNSP 191
Query: 153 RYNGTDASPNP 121
+ T P P
Sbjct: 192 PNSRTARKPVP 202
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 28.3 bits (60), Expect = 0.64
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 250 ITKEVAAVKQPIDESITFIGTTACGHVKKLIGV-DYEQ 360
+TKE +K+ +DE I + + C H K++ V D+E+
Sbjct: 238 LTKEWPVLKETVDELIDILRYSPCTHQKRIRSVSDFER 275
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 0.84
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 366 FDLFVV--DADKFFNVPTSRCPDEGDGLVDRLFDRSHLFRDTSAQLVDEI 223
F F+V D D ++ +RC +++ L +H+F D + L D I
Sbjct: 644 FQTFLVQSDIDLYYPENDTRCEVRSSSILEELGQVTHVFSDKTGTLTDNI 693
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 136 IRPIIPINMTHVLQVLAAVMMTS 204
+RP+ P NM + + VLA V++ S
Sbjct: 490 VRPVTPQNMNYAVVVLAGVLLFS 512
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 363 QRSTGTGSQSAHAKLFLNRFSSLVQT 440
Q ++ TGS++ AK FL+ +S +QT
Sbjct: 125 QTNSATGSEALMAKNFLSNLASRIQT 150
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = -1
Query: 255 RDTSAQLVDEIEP----VSGRARHHHRRED 178
+DT+ + D E V+G ++HHH R+D
Sbjct: 647 QDTAGNMSDSSEGGEAVVNGNSQHHHNRDD 676
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 5.9
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = -2
Query: 287 SIGCLTAATSFVILLLSWSMKLSPSAAALVIITAARTCSTCVMLIGIMGRMQVQTPRCSF 108
S+G + AATS+ ++LLS S + + L I+ + T S+ + + RM S
Sbjct: 1938 SVGQILAATSYQLVLLSGSS--AQFSTQLYIVGSIYTVSS--VFWWYLYRMLPSVASLSL 1993
Query: 107 PFIVNRYGFCDIFSLI 60
PF++ +C F LI
Sbjct: 1994 PFLL----YCASFLLI 2005
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 320 QAVVPMKVMDSSIGCLTAATSFVILLLSWSMKLSPSAAALVIITAARTCST 168
+ VPM MDSS + A S + LLS S SP + I +T +T
Sbjct: 168 RVAVPMSFMDSSALHTSPAFSERLKLLSSSNNFSPQLRSPKISHRLQTSAT 218
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 7.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 384 IRFPYSFDLFVVDADKFFNVPTSRCPDEGDGLVDRLFDRSHLFRDTSAQLVDEI 223
IR P F+ +V + +PT D GD D FD +F+D +L I
Sbjct: 111 IRSPEFFNDSLVRFQELLRIPTVCYDDMGDVGDDDRFDIFAVFQDKVRELYPNI 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,938
Number of Sequences: 5004
Number of extensions: 35542
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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