Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_A02
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0097 - 741881-742977,743100-743320,743438-744156 31 0.48
10_08_0029 + 14270945-14271364,14271449-14272486 30 0.84
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 29 1.9
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 29 1.9
01_06_0068 + 26163623-26163740,26163749-26165274 29 1.9
01_01_0766 - 5928283-5929092 29 2.6
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 28 3.4
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 28 4.5
01_01_0099 - 751627-752126,752866-753056,753188-753945 28 4.5
08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699 27 5.9
04_04_0208 - 23605701-23607149 27 5.9
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 5.9
11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966 27 7.8
02_02_0694 + 13013966-13014361 27 7.8
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 27 7.8
01_01_0115 - 856957-858055,858479-858538,858802-859583 27 7.8
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 31.1 bits (67), Expect = 0.48
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -2
Query: 350 STPISFLTCPQAVVPMKVMDSSIGCLTAATSFVILLLSWSMKLSPSAAALVIITAARTCS 171
+T +SF+ C QAV V + CL+ ++SFV + SW M PS II T
Sbjct: 129 ATWVSFVNCSQAVRNNSVY-VPVDCLSTSSSFVYVFGSWIM--PPS--VFPIIGNLETSC 183
Query: 170 TCVMLIGIMGRMQVQTPRCSFPFIVN--RYGFCDIFSLI 60
+ +I + G SF IV R GF F +I
Sbjct: 184 RYLAMIPLGGWDSPLPHNASFSDIVRSMRNGFAVHFPII 222
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 30.3 bits (65), Expect = 0.84
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 231 DEIEPVSGRARHHHRREDLQHVRHVDRY 148
+E + V G HHHRR H RH Y
Sbjct: 195 EEDDDVHGHGHHHHRRSSPHHPRHRRSY 222
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 341 SASTTNRSKEYGNRISISSR*TFSQPLFVSRSNINESSLTDPPIS 475
+A ++RS NR+S+S R + S + N SS PP+S
Sbjct: 89 NAQRSSRSSASPNRLSLSPRSSSSNTALTRTRSTNSSSRCSPPLS 133
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 MMTSAAADGLNFIDQLSRSITKEVAAVKQPIDESITFIGTTA-CGHVKKLIGVDYEQVKG 369
M+ S A+ +F L + + A +K T I T A CG V + V +E V
Sbjct: 466 MLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSA 525
Query: 370 VREPDLN 390
EP++N
Sbjct: 526 GIEPNVN 532
>01_06_0068 + 26163623-26163740,26163749-26165274
Length = 547
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 260 SFVILLLSWSMKLSPSAAALVIITAARTCSTCVMLIGIMGRMQVQTPRCSFPFIVNRYGF 81
SF + + A ++V AR+C C L G G+ ++T F+ R+GF
Sbjct: 31 SFAAFAFACDIMPDVEAGSVVDPPQARSCCCCACLRGNTGKFLLRTATVVILFLAVRFGF 90
>01_01_0766 - 5928283-5929092
Length = 269
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 191 TAARTCSTCVMLIGIMGRMQVQTPRCSFPFIVNRYGFCD 75
+A+ TCSTC + MG ++++ F+ +R G C+
Sbjct: 75 SASATCSTCYEMKVDMGLLEMELKELKEKFVHDRIGRCE 113
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 293 DSSIGCLTAATSFVILLLSWSMKLSPSAAALVIITAARTCSTCV 162
++ + ++ A FV SWS P A ++ AA+ +TC+
Sbjct: 770 ETKVSIISQALIFVTRSRSWSFVERPGALLVIAFLAAQLVATCI 813
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 366 FDLFVVDADKFFNVPTSRCPDEGDGLVDRLFDRSHLFRDTSAQLVDEIEPVSGRARHHHR 187
+D +D+ + V T P+E + R RS L TS+Q VD+ V +H H+
Sbjct: 806 YDYIFGSSDQMYPVSTVVIPEEHELSYSR--QRSSLNPSTSSQYVDQAAEVEMLHQHQHQ 863
>01_01_0099 - 751627-752126,752866-753056,753188-753945
Length = 482
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 338 SFLTCPQAVVPMKVMDSSIGCLTAATSFVILLLSW 234
+F+TC + V M S + CL+ ++SFV +L W
Sbjct: 155 AFVTCSREVTN-NGMYSPVACLSNSSSFVYVLTGW 188
>08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699
Length = 91
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 240 EQKYHERGGCGQTTYR-RVHHLHRDNGLW 323
+++Y G G+TT R HH H +G W
Sbjct: 46 QEQYPAGAGAGETTSRGHHHHHHHGDGFW 74
>04_04_0208 - 23605701-23607149
Length = 482
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 239 SWSMKLSPSAAALVIITAARTCSTCVML 156
+W LSP++ AL++++ AR C + L
Sbjct: 36 AWRSALSPASPALLVLSDARMCPSAASL 63
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 61 IKEKISQKPYLLT-IKGKLHRGVWTCIRPIIPINMTHVLQVLAAVMMTSAA 210
IK +S P LLT + G L RG + +P + I V+ + VM SAA
Sbjct: 28 IKRILSSYPSLLTSLGGNLARG-YKAAKPFLSIGFGRVVLGMVLVMSVSAA 77
>11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966
Length = 480
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 324 PTSRCPDEGDGLVDRLFDRSHLFRDTSAQLVDEIEPVSGRARHHHR 187
PT + P G+ + R + LF+DTS Q D ++ +G A R
Sbjct: 274 PTPQDPGAGEFMRKRYREADDLFKDTSRQ--DPVDGATGEAEQKAR 317
>02_02_0694 + 13013966-13014361
Length = 131
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 207 RARHHHRREDLQHVRHVDRYNGTDASPNPA 118
R HHHR H R DR+N P A
Sbjct: 76 RHHHHHRHHGHHHHRGHDRWNRKGVPPTAA 105
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 270 RSHLFRDTSAQLVDEIEPVSGRARHHHRREDLQH 169
R H RD+S++ DE E S ++RH HR + H
Sbjct: 770 RHHRHRDSSSE--DEHEHRSSKSRHRHRDDYHYH 801
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 350 STPISFLTCPQAVVPMKVMDSSIGCLTAATSFVILL 243
ST +F+TC Q ++ + C++ +SFV +L
Sbjct: 152 STTATFVTCSQEILKSNGKYRPVACMSTNSSFVYVL 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,452
Number of Sequences: 37544
Number of extensions: 248330
Number of successful extensions: 697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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